Browse Element(s) Details


Os.10290.1.S1_at

Description gb:AF441190.1
DB_XREF= gi:17066587
GEN=CaM
TID=Os.10290.1
CNT=50
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10290 (NCBI UniGene Cluster)
DEF=Oryza sativa clone 15295 calmodulin (CaM) mRNA, complete cds.
PROD=calmodulin
FL= gb:AF441190.1 gb:AF042839.1 gb:AK121606.1 gb:AK119167.1 gb:AK059534.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g412108/11Calmodulin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41160Os.52406.1.S1_at10/115+24024185..24026939expressed protein
LOC_Os05g41166Os.57561.1.S1_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41166OsAffx.15054.1.S1_x_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41172Os.53510.1.S1_at11/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41172Os.11922.1.S1_at6/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41172Os.52782.1.S1_at1/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41180Os.7817.1.A1_s_at10/115+24039254..24043454Proteasome subunit alpha type 3, putative, expressed
LOC_Os05g41190Os.27687.1.S1_at11/115+24043901..24045244expressed protein
LOC_Os05g41200Os.54462.1.S1_at11/115+24047031..24047769EF hand family protein, expressed
LOC_Os05g41210Os.10290.1.S1_at8/115+24049234..24051689Calmodulin, putative, expressed
LOC_Os05g41210Os.57504.1.S1_x_at1/115+24049234..24051689Calmodulin, putative, expressed
LOC_Os05g41220Os.15191.1.S1_s_at11/115+24054445..24057794SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os05g41220Os.27951.1.S1_at1/115+24054445..24057794SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os05g41230Os.47896.1.A1_at11/115+24066128..24068334BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os05g41240Os.13978.1.S1_a_at11/115+24070525..24074848MYB transcription factor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0009612biological_processresponse to mechanical stimulus
GO:0009652biological_processthigmotropism
GO:0019722biological_processcalcium-mediated signaling
GO:0030163biological_processprotein catabolism
GO:0004871molecular_functionsignal transducer activity
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10290.1.S1_at--502--1931Chr05:24050005..24050027 (23 bp)
ACGGTTGCATCACTACTAAGGAGCT
LOC_Os05g41210
Os.10290.1.S1_at--680--5851Chr05:24049985..24050009 (25 bp)
GAGCTTGGAACCGTGATGCGGTCCC
LOC_Os05g41210
Os.10290.1.S1_at--275--7391Chr05:24049973..24049997 (25 bp)
GTGATGCGGTCCCTTGGTCAGAACC
LOC_Os05g41210
Os.10290.1.S1_at--953--7231Chr05:24049965..24049989 (25 bp)
GTCCCTTGGTCAGAACCCAACTGAG
LOC_Os05g41210
Os.10290.1.S1_at--1075--5171NONE
GCAATGGGACCATTGACTTTCCCAG
NONE
Os.10290.1.S1_at--906--7631NONE
GGGACCATTGACTTTCCCAGAGTTC
NONE
Os.10290.1.S1_at--302--51NONE
ATTGACTTTCCCAGAGTTCCTGAAC
NONE
Os.10290.1.S1_at--408--10211Chr05:24049884..24049907 (24 bp)
TTTCCCAGAGTTCCTGAACCTGATG
LOC_Os05g41210
Os.10290.1.S1_at--257--1351Chr05:24049878..24049902 (25 bp)
AGAGTTCCTGAACCTGATGGCGAAG
LOC_Os05g41210
Os.10290.1.S1_at--1017--5451Chr05:24049788..24049812 (25 bp)
GAACGGTTTCATCTCGGCTGCTGAG
LOC_Os05g41210
Os.10290.1.S1_at--767--3871Chr05:24049605..24049629 (25 bp)
CTGTCTGAAGTGAACTAAAACTGTC
LOC_Os05g41210
Target Sequence 
ACGGTTGCATCACTACTAAGGAGCTTGGAACCGTGATGCGGTCCCTTGGTCAGAACCCAACTGAGGCGGAGCTGCAGGAC
ATGATCAACGAGGTTGATGCTGATGGCAATGGGACCATTGACTTTCCCAGAGTTCCTGAACCTGATGGCGAAGAAGATGA
AGGATACCGACTCTGAGGAGGAGCTCAAGGAGGCCTTTCCGTGTGTTTGACAAGGACCAGAACGGTTTCATCTCGGCTGC
TGAGCTCCGCCACGTCATGACCAACCTTGGTGAGAAGCTGACCGACGAGGAAGTCGACGAGATGATCCGTGAGGCTGACG
TCGATGGCGATGGCCAGATCAACTACGAGGAGTTCGTTAAGGTCATGATGGCCAAGTGAGGAGGGTTCCCATTAAATAAG
TTCTGTCTGAAGTGAACTAAAACTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis