Browse Element(s) Details


Os.27687.1.S1_at

Description gb:AK111382.1
DB_XREF= gi:32996591
TID=Os.27687.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27687 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-B08, full insert sequence.
FL= gb:AK111382.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4119011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41150Os.52892.1.S1_at11/115+24020523..24023345expressed protein
LOC_Os05g41160Os.52406.1.S1_at10/115+24024185..24026939expressed protein
LOC_Os05g41166Os.57561.1.S1_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41166OsAffx.15054.1.S1_x_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41172Os.53510.1.S1_at11/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41172Os.11922.1.S1_at6/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41172Os.52782.1.S1_at1/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41180Os.7817.1.A1_s_at10/115+24039254..24043454Proteasome subunit alpha type 3, putative, expressed
LOC_Os05g41190Os.27687.1.S1_at11/115+24043901..24045244expressed protein
LOC_Os05g41200Os.54462.1.S1_at11/115+24047031..24047769EF hand family protein, expressed
LOC_Os05g41210Os.10290.1.S1_at8/115+24049234..24051689Calmodulin, putative, expressed
LOC_Os05g41210Os.57504.1.S1_x_at1/115+24049234..24051689Calmodulin, putative, expressed
LOC_Os05g41220Os.15191.1.S1_s_at11/115+24054445..24057794SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os05g41220Os.27951.1.S1_at1/115+24054445..24057794SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os05g41230Os.47896.1.A1_at11/115+24066128..24068334BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27687.1.S1_at--762--4491Chr05:24044474..24044498 (25 bp)
GCCGGGACGGCTTCTCGTGACTGAT
LOC_Os05g41190
Os.27687.1.S1_at--893--8291Chr05:24044466..24044490 (25 bp)
GGCTTCTCGTGACTGATTCAGCATA
LOC_Os05g41190
Os.27687.1.S1_at--238--6571Chr05:24044452..24044476 (25 bp)
GATTCAGCATATGAACATACGCATT
LOC_Os05g41190
Os.27687.1.S1_at--760--2831Chr05:24044414..24044438 (25 bp)
AAGTTTGTGAATTACTGCTTGTGAT
LOC_Os05g41190
Os.27687.1.S1_at--60--1991Chr05:24044401..24044425 (25 bp)
ACTGCTTGTGATTCGTGGTGTTAAT
LOC_Os05g41190
Os.27687.1.S1_at--16--7411Chr05:24044384..24044408 (25 bp)
GTGTTAATTAAGTTGGTGACGCTGA
LOC_Os05g41190
Os.27687.1.S1_at--393--8051Chr05:24044354..24044378 (25 bp)
GGAGACGGATCTGCGTATTGACGCA
LOC_Os05g41190
Os.27687.1.S1_at--1032--5571Chr05:24044305..24044329 (25 bp)
GAAATGGCGATGTTCAATTGTACAT
LOC_Os05g41190
Os.27687.1.S1_at--842--3571Chr05:24044148..24044172 (25 bp)
CATATGCATCTGAGAGAAACTGTTT
LOC_Os05g41190
Os.27687.1.S1_at--1105--5531Chr05:24044133..24044157 (25 bp)
GAAACTGTTTTCTTAGACCCGCTAT
LOC_Os05g41190
Os.27687.1.S1_at--695--5811Chr05:24044118..24044142 (25 bp)
GACCCGCTATTCTAATCTACTTTCT
LOC_Os05g41190
Target Sequence 
GCCGGGACGGCTTCTCGTGACTGATTCAGCATATGAACATACGCATTTGCAGAGTAATTAAAGTTTGTGAATTACTGCTT
GTGATTCGTGGTGTTAATTAAGTTGGTGACGCTGAAGAGGGGAGACGGATCTGCGTATTGACGCAATGAGGAGATGAATT
AGCAAGGAAGAAATGGCGATGTTCAATTGTACATCNCCGAAGGGAGCTAGCTGTTGAAGTGAAAGTGTAAACTNTGCCTT
GTAGTTGAGAAATATTGAGTGTTTCGAGCGAGTATAATTACAGNGAATTATNNGNACNCTGAATTATCGCCANNNANNAN
NNNNNNCATATGCATCTGAGAGAAACTGTTTTCTTAGACCCGCTATTCTAATCTACTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27687.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis