Browse Element(s) Details


Os.54462.1.S1_at

Description gb:AK105230.1
DB_XREF= gi:32990439
TID=Os.54462.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54462 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-F03, full insert sequence.
FL= gb:AK105230.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4120011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41150Os.52892.1.S1_at11/115+24020523..24023345expressed protein
LOC_Os05g41160Os.52406.1.S1_at10/115+24024185..24026939expressed protein
LOC_Os05g41166Os.57561.1.S1_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41166OsAffx.15054.1.S1_x_at11/115+24027633..24031620Transcription factor GAMYB, putative, expressed
LOC_Os05g41172Os.53510.1.S1_at11/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41172Os.11922.1.S1_at6/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41172Os.52782.1.S1_at1/115+24032417..24038459YDG/SRA domain containing protein, expressed
LOC_Os05g41180Os.7817.1.A1_s_at10/115+24039254..24043454Proteasome subunit alpha type 3, putative, expressed
LOC_Os05g41190Os.27687.1.S1_at11/115+24043901..24045244expressed protein
LOC_Os05g41200Os.54462.1.S1_at11/115+24047031..24047769EF hand family protein, expressed
LOC_Os05g41210Os.10290.1.S1_at8/115+24049234..24051689Calmodulin, putative, expressed
LOC_Os05g41210Os.57504.1.S1_x_at1/115+24049234..24051689Calmodulin, putative, expressed
LOC_Os05g41220Os.15191.1.S1_s_at11/115+24054445..24057794SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os05g41220Os.27951.1.S1_at1/115+24054445..24057794SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os05g41230Os.47896.1.A1_at11/115+24066128..24068334BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os05g41240Os.13978.1.S1_a_at11/115+24070525..24074848MYB transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0009652biological_processthigmotropism
GO:0019722biological_processcalcium-mediated signaling
GO:0030163biological_processprotein catabolism
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54462.1.S1_at--527--8471Chr05:24047658..24047682 (25 bp)
TGGCGGCCAAGCTGACCCAAGAACA
LOC_Os05g41200
Os.54462.1.S1_at--192--2491Chr05:24047637..24047661 (25 bp)
AACAGGTGGACGAGTGCCGAGAAAT
LOC_Os05g41200
Os.54462.1.S1_at--652--4511Chr05:24047622..24047646 (25 bp)
GCCGAGAAATCTTCGACCTGTTCGA
LOC_Os05g41200
Os.54462.1.S1_at--928--3971Chr05:24047315..24047339 (25 bp)
CGTGCTTGGACGTGTTCGACGACGC
LOC_Os05g41200
Os.54462.1.S1_at--236--3491Chr05:24047256..24047280 (25 bp)
CAGGCGATGGTGTCCCACGGCGACC
LOC_Os05g41200
Os.54462.1.S1_at--1102--4511Chr05:24047174..24047198 (25 bp)
GCCGCGTCGAGTACAAGGAGTTCGT
LOC_Os05g41200
Os.54462.1.S1_at--253--6071Chr05:24047157..24047181 (25 bp)
GAGTTCGTCAAGGTGTTGATGAACA
LOC_Os05g41200
Os.54462.1.S1_at--797--6951Chr05:24047128..24047152 (25 bp)
GTAGCAGTAATACTACTAGCTGTTT
LOC_Os05g41200
Os.54462.1.S1_at--419--10571Chr05:24047088..24047112 (25 bp)
TTCTATGCTTAATTTGTTTGCGAAA
LOC_Os05g41200
Os.54462.1.S1_at--478--6851Chr05:24047073..24047097 (25 bp)
GTTTGCGAAAGATATCCATGTGGTT
LOC_Os05g41200
Os.54462.1.S1_at--810--4331Chr05:24047058..24047082 (25 bp)
CCATGTGGTTAATCAACCTTGGTAA
LOC_Os05g41200
Target Sequence 
TGGCGGCCAAGCTGACCCAAGAACAGGTGGACGAGTGCCGAGAAATCTTCGACCTGTTCGACAGCGACGAGGACGGTCGC
ATCGCCGCCGGCGAGCTCGTGACGGCGCTGCGGTCGCTGGGCCAGAACGTCGACGAGGCCGAGGCGCGGCGGTTCCTGGC
GGACGCCACCGCCAGCGGCGGCGGCGGCGGAGGCGGCGGAGACATCGACTTCGCGGCGTTCCTGTCGGTGGCGGCGCGCA
AGATGAGGCGCGGGGCGACGGAGAAGGAGCTCGCGGCGTGCTTGGACGTGTTCGACGACGCGCGGAGCGGGGTGATCCCG
GCGGAGCAGCTCCGGCAGGCGATGGTGTCCCACGGCGACCGGCTGACGGAGGAGGAGGCCGACGAGATGGTGCGCAAGGC
GGATCCCGCCGGCGAGGGCCGCGTCGAGTACAAGGAGTTCGTCAAGGTGTTGATGAACAACAAGTAGCAGTAATACTACT
AGCTGTTTTGTTTTGTTTTGTTTTTCTATGCTTAATTTGTTTGCGAAAGATATCCATGTGGTTAATCAACCTTGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis