Browse Element(s) Details


Os.22564.1.S1_at

Description gb:AK120984.1
DB_XREF= gi:37990607
TID=Os.22564.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22564 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042D20, full insert sequence.
FL= gb:AK120984.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4111011/1160S ribosomal protein L30, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41040NANA5+23967746..23971172transposon protein, putative, Mutator sub-class
LOC_Os05g41050OsAffx.27271.1.S1_at11/115+23971575..23972158hypothetical protein
LOC_Os05g41060Os.10931.1.S1_at9/115+23973918..23977426ADP-ribosylation factor, putative, expressed
LOC_Os05g41060Os.4733.1.S1_at1/115+23973918..23977426ADP-ribosylation factor, putative, expressed
LOC_Os05g41070Os.51688.1.S1_s_at11/115+23979465..23982759bZIP transcription factor family protein, expressed
LOC_Os05g41070Os.51688.1.S1_at11/115+23979465..23982759bZIP transcription factor family protein, expressed
LOC_Os05g41080Os.18405.1.S1_at10/115+23984503..23986986Histone H3, putative, expressed
LOC_Os05g41090Os.53033.1.S1_at11/115+23987984..23991882Calcium and calcium/calmodulin-dependent serine/threonine-proteinkinase, putative, expressed
LOC_Os05g41100Os.51939.1.S1_at11/115+23992386..23994674Krr1 family protein, expressed
LOC_Os05g41110Os.22564.1.S1_at11/115+23994851..2399676660S ribosomal protein L30, putative, expressed
LOC_Os05g41120Os.38127.1.S1_s_at11/115+23997899..24003783Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os05g41120Os.38127.1.S1_at7/115+23997899..24003783Serologically defined breast cancer antigen NY-BR-84 homolog, putative, expressed
LOC_Os05g41130Os.27954.1.A1_at11/115+24006538..24008510F-box family protein, putative, expressed
LOC_Os05g41140OsAffx.4584.1.S1_at10/115+24010549..24012301hypothetical protein
LOC_Os05g41150Os.52892.1.S1_at11/115+24020523..24023345expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22564.1.S1_at--949--7611Chr05:23996005..23996029 (25 bp)
GGGAAGCTGATTATCCTTGCAAACA
LOC_Os05g41110
Os.22564.1.S1_at--843--6051Chr05:23996053..23996077 (25 bp)
GAGATTGAGTATTACGCCATGTTGG
LOC_Os05g41110
Os.22564.1.S1_at--453--2271Chr05:23996080..23996104 (25 bp)
AAAGTTAGCGTTCACCATTTCCATG
LOC_Os05g41110
Os.22564.1.S1_at--696--9891Chr05:23996265..23996289 (25 bp)
TACTACCGGGTGTGCTGCCTCAGCA
LOC_Os05g41110
Os.22564.1.S1_at--426--4971Chr05:23996287..23996399 (25 bp)
GCATCATCGACCCTGGTGACTCGGA
LOC_Os05g41110
Os.22564.1.S1_at--350--7771Chr05:23996389..23996413 (25 bp)
GGTGACTCGGACATCATCAACACAA
LOC_Os05g41110
Os.22564.1.S1_at--419--4271Chr05:23996416..23996440 (25 bp)
CCTGCCTCCCAGTGAAGAAGTTTTT
LOC_Os05g41110
Os.22564.1.S1_at--795--7891Chr05:23996462..23996486 (25 bp)
GGTTCAGACGTGCTTACATGGCCAA
LOC_Os05g41110
Os.22564.1.S1_at--260--3211Chr05:23996484..23996508 (25 bp)
CAATGGCTGTTTCTTGGTTATCTTT
LOC_Os05g41110
Os.22564.1.S1_at--1083--1231Chr05:23996509..23996533 (25 bp)
AGTTGTGTAATTTTGCTATGCTGAG
LOC_Os05g41110
Os.22564.1.S1_at--1029--611Chr05:23996526..23996550 (25 bp)
ATGCTGAGTTGGGATCTGCCATACA
LOC_Os05g41110
Target Sequence 
GGGAAGCTGATTATCCTTGCAAACAACTGCCCTCCACTCAGGAAGTCTGAGATTGAGTATTACGCCATGTTGGGAAAAGT
TAGCGTTCACCATTTCCATGGAAACAATGTTGATCTTGGAACTGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCA
TCATCGACCCTGGTGACTCGGACATCATCAACACAACCCCTGCCTCCCAGTGAAGAAGTTTTTACCTATTTAGTTGAGAT
GTAGGGTTCAGACGTGCTTACATGGCCAATGGCTGTTTCTTGGTTATCTTTAGTTGTGTAATTTTGCTATGCTGAGTTGG
GATCTGCCATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis