Browse Element(s) Details


Os.25020.1.S1_at

Description gb:AK103739.1
DB_XREF= gi:32988948
TID=Os.25020.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25020 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033138K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033138K17, full insert sequence.
FL= gb:AK103739.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4101011/11oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40960OsAffx.27267.1.S1_at11/115+23932212..23934242myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g40970NANA5+23936885..23938426expressed protein
LOC_Os05g40980Os.24217.1.A1_s_at11/115+23940462..23942904Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40990Os.6676.1.S1_at11/115+23944568..23947596oxidoreductase, FAD-binding family protein, expressed
LOC_Os05g41000Os.17783.1.S1_at11/115+23950403..23955844Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g41010Os.25020.1.S1_at11/115+23957763..23960697oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os05g41030Os.8994.1.S1_at11/115+23962324..23964637Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g41040NANA5+23967746..23971172transposon protein, putative, Mutator sub-class
LOC_Os05g41050OsAffx.27271.1.S1_at11/115+23971575..23972158hypothetical protein
LOC_Os05g41060Os.10931.1.S1_at9/115+23973918..23977426ADP-ribosylation factor, putative, expressed
LOC_Os05g41060Os.4733.1.S1_at1/115+23973918..23977426ADP-ribosylation factor, putative, expressed
LOC_Os05g41070Os.51688.1.S1_s_at11/115+23979465..23982759bZIP transcription factor family protein, expressed
LOC_Os05g41070Os.51688.1.S1_at11/115+23979465..23982759bZIP transcription factor family protein, expressed
LOC_Os05g41080Os.18405.1.S1_at10/115+23984503..23986986Histone H3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0018401biological_processpeptidyl-proline hydroxylation to 4-hydroxy-L-proline
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004656molecular_functionprocollagen-proline 4-dioxygenase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25020.1.S1_at--409--8171Chr05:23960137..23960161 (25 bp)
GGAACAGCAGCATTACCAGGTTACT
LOC_Os05g41010
Os.25020.1.S1_at--886--1011Chr05:23960263..23960287 (25 bp)
AGGTTCATGAGGTTTTTGGCACAAA
LOC_Os05g41010
Os.25020.1.S1_at--1059--7871Chr05:23960301..23960325 (25 bp)
GGTTACTTCCTGATGACAACTTGGT
LOC_Os05g41010
Os.25020.1.S1_at--357--3591Chr05:23960335..23960359 (25 bp)
CATTCTTCAATGGTAACTGGCAGGA
LOC_Os05g41010
Os.25020.1.S1_at--752--291Chr05:23960460..23960484 (25 bp)
ATAGAGTTGTCGACTTGAGCCTACT
LOC_Os05g41010
Os.25020.1.S1_at--673--3551Chr05:23960518..23960542 (25 bp)
CATCTGGTCTGGTTTTCATCTGTAA
LOC_Os05g41010
Os.25020.1.S1_at--540--3551Chr05:23960534..23960558 (25 bp)
CATCTGTAATCCTTGAGTTGTCGAC
LOC_Os05g41010
Os.25020.1.S1_at--516--3611Chr05:23960545..23960569 (25 bp)
CTTGAGTTGTCGACTTGAACCTACT
LOC_Os05g41010
Os.25020.1.S1_at--1130--7811Chr05:23960571..23960595 (25 bp)
GGTCATGGTTAGATCCTGCCAGAAT
LOC_Os05g41010
Os.25020.1.S1_at--666--9451Chr05:23960605..23960629 (25 bp)
TCTGGCCTGGTTTTCATACCTGTAA
LOC_Os05g41010
Os.25020.1.S1_at--553--311Chr05:23960620..23960644 (25 bp)
ATACCTGTAATCCTTCTCATTTGTG
LOC_Os05g41010
Target Sequence 
GGAACAGCAGCATTACCAGGTTACTNCAGGAAGAGTTGCAACNTATGTNANCGATCCNATTGTAAATAATCAACGGTAAC
TGCTTTGTNGGCAGTCTGATTTATACAGGAATGGGTTAAAATAAGTAGGTTCATGAGGTTTTTGGCACAAATTCTNCCAG
TTTTGGTTACTTCCTGATGACAACTTGGTTTTTGTTACCATTCTTCAATGGTAACTGGCAGGAATTAGAAAGCAACTCAT
TGTTAGTATCCATAATTTATGCTAGATGGAGATGCNCTTTATCAGTGCAATTTCTTTGGAGAGCAGGTTTTTGTTTTTAT
TTCATAGAGTTGTCGACTTGAGCCTACTAGGTTATGGTTGGATNCTGCCANAATTTACAAACATCTGGTCTGGTTTTCAT
CTGTAATCCTTGAGTTGTCGACTTGAACCTACTAGGTCATGGTTAGATCCTGCCAGAATTTACAAACATCTGGCCTGGTT
TTCATACCTGTAATCCTTCTCATTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis