Browse Element(s) Details


Os.17783.1.S1_at

Description gb:AK066065.1
DB_XREF= gi:32976083
TID=Os.17783.1
CNT=11
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.17783 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013055K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055K24, full insert sequence.
FL= gb:AK066065.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4100011/11Endonuclease/Exonuclease/phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40940OsAffx.25819.2.S1_at11/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.25819.3.S1_at3/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.25819.1.S1_at1/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.13875.1.S1_at1/115+23925218..23927091hypothetical protein
LOC_Os05g40950Os.56225.1.S1_at11/115+23930253..23931294expressed protein
LOC_Os05g40960OsAffx.27267.1.S1_at11/115+23932212..23934242myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g40970NANA5+23936885..23938426expressed protein
LOC_Os05g40980Os.24217.1.A1_s_at11/115+23940462..23942904Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40990Os.6676.1.S1_at11/115+23944568..23947596oxidoreductase, FAD-binding family protein, expressed
LOC_Os05g41000Os.17783.1.S1_at11/115+23950403..23955844Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g41010Os.25020.1.S1_at11/115+23957763..23960697oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os05g41030Os.8994.1.S1_at11/115+23962324..23964637Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os05g41040NANA5+23967746..23971172transposon protein, putative, Mutator sub-class
LOC_Os05g41050OsAffx.27271.1.S1_at11/115+23971575..23972158hypothetical protein
LOC_Os05g41060Os.10931.1.S1_at9/115+23973918..23977426ADP-ribosylation factor, putative, expressed
LOC_Os05g41060Os.4733.1.S1_at1/115+23973918..23977426ADP-ribosylation factor, putative, expressed
LOC_Os05g41070Os.51688.1.S1_s_at11/115+23979465..23982759bZIP transcription factor family protein, expressed
LOC_Os05g41070Os.51688.1.S1_at11/115+23979465..23982759bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17783.1.S1_at--297--7691Chr05:23955180..23955204 (25 bp)
GGAGTCCAAATTTTCGGATCACCGT
LOC_Os05g41000
Os.17783.1.S1_at--347--391Chr05:23955197..23955221 (25 bp)
ATCACCGTCCTGTCTGTGGAACATT
LOC_Os05g41000
Os.17783.1.S1_at--578--5231Chr05:23955284..23955308 (25 bp)
GAATAGGTGCTGAAGAACTCTTACC
LOC_Os05g41000
Os.17783.1.S1_at--641--8211Chr05:23955528..23955552 (25 bp)
GGCACCTGTAGGTATTTATTCCAAA
LOC_Os05g41000
Os.17783.1.S1_at--420--2891Chr05:23955579..23955603 (25 bp)
AAGGTGATTACCAAGTCGTACAGAA
LOC_Os05g41000
Os.17783.1.S1_at--828--6931Chr05:23955607..23955631 (25 bp)
GTAGTGCATATATACTTTCCAAAGG
LOC_Os05g41000
Os.17783.1.S1_at--174--3191Chr05:23955657..23955681 (25 bp)
CAATTTTCCACATTCTTTTTGTTCT
LOC_Os05g41000
Os.17783.1.S1_at--506--2871Chr05:23955694..23955718 (25 bp)
AAGTGTGCCTATGCATAGCTATCCA
LOC_Os05g41000
Os.17783.1.S1_at--1147--291Chr05:23955708..23955732 (25 bp)
ATAGCTATCCAGAATCCATTGACCC
LOC_Os05g41000
Os.17783.1.S1_at--371--4211Chr05:23955731..23955755 (25 bp)
CCCCTTGTATTATTGTGTCTGTCTG
LOC_Os05g41000
Os.17783.1.S1_at--661--7451Chr05:23955745..23955769 (25 bp)
GTGTCTGTCTGATCAGTTTGAACTT
LOC_Os05g41000
Target Sequence 
GGAGTCCAAATTTTCGGATCACCGTCCTGTCTGTGGAACATTTATTGTTGATGTTGAAATACAAGAGAGCAGATCAAAGA
GGCGATCATNTAATACCAACATCAGAATAGGTGCTGAAGAACTCTTACCAACTAGTAAGAGTAAGGCTAATAAAAATAAG
GGCAATAAAGGTTNTGGGACCTAAACCCTATTGGAAATTAAATTGGTAGCAACAGCAACTTGTACTAAGATACTGAAGAA
TATTTCCATCGGCACCTGTAGGTATTTATTCCAAAGCAGATTATTTTTTTGTGACAGGGGAAAGGTGATTACCAAGTCGT
ACAGAAAATGTAGTGCATATATACTTTCCAAAGGGAAAGGTGATTATATTATACTCGAACAATTTTCCACATTCTTTTTG
TTCTTTTGGGTAGAACAAGTGTGCCTATGCATAGCTATCCAGAATCCATTGACCCCCTTGTATTATTGTGTCTGTCTGAT
CAGTTTGAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis