Browse Element(s) Details


OsAffx.25819.3.S1_at

Description tigr:9632.m00013
TID=OsAffx.25819.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0112411/11hypothetical protein
LOC_Os05g409403/11hypothetical protein
LOC_Os07g246803/11hypothetical protein
LOC_Os09g011303/11hypothetical protein
LOC_Os11g230602/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01070NANA4+48461..52076transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g01080NANA4+53570..55208hypothetical protein
LOC_Os04g01089OsAffx.31844.1.S1_at4/114+57408..58289NA
LOC_Os04g01089OsAffx.2606.1.S1_at2/114+57408..58289NA
LOC_Os04g01089OsAffx.1436.1.S1_x_at1/114+57408..58289NA
LOC_Os04g01089OsAffx.8939.1.S1_x_at1/114+57408..58289NA
LOC_Os04g01100NANA4+60275..61237hAT family dimerisation domain containing protein
LOC_Os04g01110NANA4+61795..63463BED zinc finger family protein
LOC_Os04g01120NANA4+64513..67460retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01124OsAffx.25819.3.S1_at11/114+73522..74064hypothetical protein
LOC_Os04g01124OsAffx.25819.1.S1_at1/114+73522..74064hypothetical protein
LOC_Os04g01130Os.39952.1.S1_at11/114+79564..88464MRG family protein, expressed
LOC_Os04g01130Os.7943.3.S1_s_at8/114+79564..88464MRG family protein, expressed
LOC_Os04g01130OsAffx.31293.1.S1_at2/114+79564..88464MRG family protein, expressed
LOC_Os04g01140Os.8511.1.S1_s_at11/114+90337..92174Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25819.3.S1_at--162--3134Chr07:14040193..14040217 (25 bp)
CAATCCTCCACGAGGTGAACGTGAT
LOC_Os07g24680
OsAffx.25819.3.S1_at--1120--5452Chr07:14040209..14040622 (25 bp)
GAACGTGATATGTATTACTTCCAAA
LOC_Os07g24680
OsAffx.25819.3.S1_at--987--6871Chr04:73837..73861 (25 bp)
GTATTACTTCCAAACACATCATAGG
LOC_Os04g01124
OsAffx.25819.3.S1_at--126--9591Chr04:73819..73843 (25 bp)
TCATAGGTGGGATACCATGCGAGCT
LOC_Os04g01124
OsAffx.25819.3.S1_at--787--4331Chr04:73805..73829 (25 bp)
CCATGCGAGCTGCACTATATGATGT
LOC_Os04g01124
OsAffx.25819.3.S1_at--666--5893Chr07:14040258..14040282 (25 bp)
GAGCTGCACTATATGATGTGTCCAG
LOC_Os07g24680
OsAffx.25819.3.S1_at--479--714Chr11:12783627..12783651 (25 bp)
ATGATGTGTCCAGGGAGGCTTTTCT
LOC_Os11g23060
OsAffx.25819.3.S1_at--357--3693Chr11:12783650..12783669 (20 bp)
CTACGTCTTAATCATATCTACCGAG
LOC_Os11g23060
OsAffx.25819.3.S1_at--736--9731Chr04:73756..73780 (25 bp)
TAATCATATCTACCGAGACAGGTTG
LOC_Os04g01124
OsAffx.25819.3.S1_at--706--5851Chr04:73698..73722 (25 bp)
GAGCCAGGCGAAGATTATTGTACCC
LOC_Os04g01124
OsAffx.25819.3.S1_at--258--691Chr04:73576..73600 (25 bp)
GGATGTACAACATAAACGTTTGGAA
LOC_Os04g01124
Target Sequence 
CAATCCTCCACGAGGTGAACGTGATATGTATTACTTCCAAACACATCATAGGTGGGATACCATGCGAGCTGCACTATATG
ATGTGTCCAGGGAGGCTTTTCTACGTCTTAATCATATCTACCGAGACAGGTTGCAACACTCTCGCTATTCTTATCATCCT
ATGCGAGAGCCAGGCGAAGATTATTGTACCCTCCAGAATGTGGATTATCATGAACAACCAGTGAAAGCAACTATGTCTAT
CTGGATGGAAGCCGCGGATGACATGTATGAAGAAGCTTTGGAACATATGGATGTACAACATAAACGTTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25819.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis