Browse Element(s) Details


OsAffx.25829.1.S1_at

Description tigr:9632.m00098
TID=OsAffx.25829.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0194011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01900NANA4+557063..557893transposon protein, putative, unclassified
LOC_Os04g01910Os.51154.1.S1_at11/114+559389..560725expressed protein
LOC_Os04g01920NANA4+561017..561304hypothetical protein
LOC_Os04g01930OsAffx.13617.1.S1_x_at11/114+576481..578063exostosin family protein, putative
LOC_Os04g01930OsAffx.13617.1.S1_at11/114+576481..578063exostosin family protein, putative
LOC_Os04g01930OsAffx.27499.3.S1_x_at1/114+576481..578063exostosin family protein, putative
LOC_Os04g01940OsAffx.25829.1.S1_at11/114+579506..582256hypothetical protein
LOC_Os04g01950Os.51275.1.S1_at11/114+583902..584993expressed protein
LOC_Os04g01960Os.52971.1.S1_at9/114+590515..591421expressed protein
LOC_Os04g01970Os.51839.1.S1_x_at11/114+592840..599416SWIRM domain containing protein, expressed
LOC_Os04g01970Os.49437.1.S1_at1/114+592840..599416SWIRM domain containing protein, expressed
LOC_Os04g01980OsAffx.25830.1.S1_at11/114+600715..603239hypothetical protein
LOC_Os04g01990Os.49158.1.S1_at11/114+604329..606886pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25829.1.S1_at--547--7711Chr04:581023..581047 (25 bp)
GGGTGAAGAAATGCCTCCTGCTGCT
LOC_Os04g01940
OsAffx.25829.1.S1_at--353--5031Chr04:580496..581016 (25 bp)
GCAGTAGTTTTTCTGTGTATCGCTA
LOC_Os04g01940
OsAffx.25829.1.S1_at--1137--1231Chr04:580450..580474 (25 bp)
AGTTGCTCAAGCATGGCGCTACTGA
LOC_Os04g01940
OsAffx.25829.1.S1_at--489--2351Chr04:580405..580429 (25 bp)
AAAGCAGTGTCATTCGCCTGTGTGC
LOC_Os04g01940
OsAffx.25829.1.S1_at--634--691Chr04:580379..580403 (25 bp)
ATGAGCCTTTTCCATCTCCAAGGAT
LOC_Os04g01940
OsAffx.25829.1.S1_at--949--2891Chr04:580360..580384 (25 bp)
AAGGATGCCAATCTCTTGTTGCCGC
LOC_Os04g01940
OsAffx.25829.1.S1_at--685--4251Chr04:580231..580360 (25 bp)
CCGGTGCCATGCTGGGTGTTGCAAA
LOC_Os04g01940
OsAffx.25829.1.S1_at--520--10151Chr04:580141..580165 (25 bp)
TATCACTTCCGTGTTGTGAGCTCGA
LOC_Os04g01940
OsAffx.25829.1.S1_at--12--8931Chr04:580075..580099 (25 bp)
TGACCATACTGCAACAGTCTTCCTT
LOC_Os04g01940
OsAffx.25829.1.S1_at--157--10871Chr04:579954..579978 (25 bp)
TTGGCCGAGGCCTAGTTATGAATTG
LOC_Os04g01940
OsAffx.25829.1.S1_at--653--411Chr04:579537..579942 (25 bp)
ATCAGGATTTGAATCGCCTCTCTGG
LOC_Os04g01940
Target Sequence 
GGGTGAAGAAATGCCTCCTGCTGCTTCTGCAGCAGTAGTTTTTCTGTGTATCGCTAAGGAGGCTGAGCTGATGCTTGAGT
TGCTCAAGCATGGCGCTACTGATACGGATGACATCATCCAGCAAAGCAGTGTCATTCGCCTGTGTGCCATGAGCCTTTTC
CATCTCCAAGGATGCCAATCTCTTGTTGCCGCCGGTGCCATGCTGGGTGTTGCAAAGGAGGCTAAAATGCTGTGTGATTG
GATGAAGAAAGAGAACAAGCTTGTCATCTTCAGCAAATCATTATCACTTCCGTGTTGTGAGCTCGAGGAGAGCCGATTGA
TCAGGATCAGAGCCTTGGATGTTATGATGACCATACTGCAACAGTCTTCCTTTCCTTCTTCCAAGCATGATTTGGAATTT
GGCCGAGGCCTAGTTATGAATTGTGCTATTTATGATCAGGATTTGAATCGCCTCTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis