Browse Element(s) Details


OsAffx.25846.1.S1_s_at

Description tigr:9632.m00204
TID=OsAffx.25846.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0297011/11Cucumisin precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02950OsAffx.32056.1.S1_x_at11/114+1166629..1169784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g02950OsAffx.32056.1.S1_at11/114+1166629..1169784transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g02960OsAffx.10637.1.S1_s_at11/114+1171439..1184186retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02960OsAffx.10637.3.S1_s_at11/114+1171439..1184186retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02960OsAffx.10637.4.S1_s_at8/114+1171439..1184186retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02960OsAffx.19542.3.S1_x_at3/114+1171439..1184186retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02960OsAffx.9949.1.S1_at1/114+1171439..1184186retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02970OsAffx.25846.1.S1_s_at11/114+1188292..1190004Cucumisin precursor, putative, expressed
LOC_Os04g02980OsAffx.25853.1.S1_at11/114+1196587..1206116Subtilisin N-terminal Region family protein
LOC_Os04g02990OsAffx.3706.1.S1_at11/114+1208003..1208519subtilisin-like protease, putative
LOC_Os04g03000OsAffx.13631.4.S1_s_at11/114+1208996..1211441hAT family dimerisation domain containing protein
LOC_Os04g03010NANA4+1213583..1214698hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25846.1.S1_s_at--925--4591Chr04:1189455..1189479 (25 bp)
GCGAAAGGATCACTTACTGACCTGA
LOC_Os04g02970
OsAffx.25846.1.S1_s_at--530--5671Chr04:1189511..1189535 (25 bp)
GACATTCCAAGCTATGACACGCACT
LOC_Os04g02970
OsAffx.25846.1.S1_s_at--203--731Chr04:1189543..1189567 (25 bp)
ATGTTGGCCAAGTTAATGCCGTGTA
LOC_Os04g02970
OsAffx.25846.1.S1_s_at--402--6891Chr04:1189565..1189589 (25 bp)
GTATAAGGCATTCTTCCAAGCTCCA
LOC_Os04g02970
OsAffx.25846.1.S1_s_at--1101--9351Chr04:1189609..1189633 (25 bp)
TCGAGCCACCAGTGCTGGTGTTCAA
LOC_Os04g02970
OsAffx.25846.1.S1_s_at--425--5891Chr04:1189652..1189676 (25 bp)
GAGCTTCAGGGTGACCTTCAAGGCT
LOC_Os04g02970
OsAffx.25846.1.S1_s_at--83--2311Chr04:1189682..1189706 (25 bp)
AAAGGTGCAGGGTGACTACAGGTTT
LOC_Os04g02970
OsAffx.25846.1.S1_s_at--589--5291Chr04:1189873..1189897 (25 bp)
GAAGGCGAATTCATATGCTCCAATA
LOC_Os04g02970
OsAffx.25846.1.S1_s_at--157--6851Chr04:1189915..1189939 (25 bp)
GTTTCTGGAATCTTGCTGCATCTTA
LOC_Os04g02970
OsAffx.25846.1.S1_s_at--289--4771Chr04:1189929..1189953 (25 bp)
GCTGCATCTTATTCCAAATCCAAGT
LOC_Os04g02970
OsAffx.25846.1.S1_s_at--662--3031Chr04:1189945..1189969 (25 bp)
AATCCAAGTGGCGTATATCTGTTAA
LOC_Os04g02970
Target Sequence 
GCGAAAGGATCACTTACTGACCTGAACCTCCCATCCATTGCCATCCCTAACCTCAGGACATTCCAAGCTATGACACGCAC
TGTCACCAATGTTGGCCAAGTTAATGCCGTGTATAAGGCATTCTTCCAAGCTCCAGCTGGTGTCGAGATGGCCGTCGAGC
CACCAGTGCTGGTGTTCAACAAGAACAGAAGAGTGCAGAGCTTCAGGGTGACCTTCAAGGCTACACGAAAGGTGCAGGGT
GACTACAGGTTTGGAAGCTTGGCGTGGCATGATGGAGGCAGCCACTGGGTTCGGATCCCCATCGCCGTTCGCATCGTGAT
TGAGGAGATCTACTCCAAGATCTCCTAATTAATTGGATATTGGATATATATGCTAGCTACTAATGATGCTAGTTGATCAA
TGGTCGAATGGAATAAATGAAGGCGAATTCATATGCTCCAATATATAGCATGTTATATGTGTTTCTGGAATCTTGCTGCA
TCTTATTCCAAATCCAAGTGGCGTATATCTGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25846.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis