Browse Element(s) Details


OsAffx.25853.1.S1_at

Description tigr:9632.m00205
TID=OsAffx.25853.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Subtilase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0298011/11Subtilisin N-terminal Region family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02960OsAffx.10637.1.S1_s_at11/114+1171439..1184186retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02960OsAffx.10637.3.S1_s_at11/114+1171439..1184186retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02960OsAffx.10637.4.S1_s_at8/114+1171439..1184186retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02960OsAffx.19542.3.S1_x_at3/114+1171439..1184186retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02960OsAffx.9949.1.S1_at1/114+1171439..1184186retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02970OsAffx.25846.1.S1_s_at11/114+1188292..1190004Cucumisin precursor, putative, expressed
LOC_Os04g02980OsAffx.25853.1.S1_at11/114+1196587..1206116Subtilisin N-terminal Region family protein
LOC_Os04g02990OsAffx.3706.1.S1_at11/114+1208003..1208519subtilisin-like protease, putative
LOC_Os04g03000OsAffx.13631.4.S1_s_at11/114+1208996..1211441hAT family dimerisation domain containing protein
LOC_Os04g03010NANA4+1213583..1214698hypothetical protein
LOC_Os04g03020OsAffx.13632.1.S1_at11/114+1216992..1220535hypothetical protein
LOC_Os04g03030OsAffx.25936.1.S1_s_at9/114+1223537..1226575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03030OsAffx.25936.7.S1_s_at8/114+1223537..1226575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03030OsAffx.25936.2.S1_x_at4/114+1223537..1226575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03030OsAffx.25936.5.S1_x_at2/114+1223537..1226575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03040Os.10827.1.S1_x_at9/114+1229730..1233017transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03040Os.46055.2.S1_x_at5/114+1229730..1233017transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25853.1.S1_at--955--4331Chr04:1205676..1205700 (25 bp)
CCAGGCCTCATATACGACATCGAAC
LOC_Os04g02980
OsAffx.25853.1.S1_at--398--8431Chr04:1205679..1205703 (25 bp)
GGCCTCATATACGACATCGAACCAT
LOC_Os04g02980
OsAffx.25853.1.S1_at--417--9631Chr04:1205818..1205842 (25 bp)
TCAGGACATTCCAGGCCACAACGCG
LOC_Os04g02980
OsAffx.25853.1.S1_at--4--891Chr04:1205863..1205887 (25 bp)
AGGCCAATGCCAGGTACAAGGCGTT
LOC_Os04g02980
OsAffx.25853.1.S1_at--595--591Chr04:1205869..1205893 (25 bp)
ATGCCAGGTACAAGGCGTTCCTCTA
LOC_Os04g02980
OsAffx.25853.1.S1_at--138--7751Chr04:1205904..1205928 (25 bp)
GGTGTCGAGATGACCGTCGATCCGC
LOC_Os04g02980
OsAffx.25853.1.S1_at--667--7211Chr04:1205919..1205943 (25 bp)
GTCGATCCGCCAGTGCTAGTGTTCA
LOC_Os04g02980
OsAffx.25853.1.S1_at--104--9311Chr04:1205924..1205948 (25 bp)
TCCGCCAGTGCTAGTGTTCAGCAAA
LOC_Os04g02980
OsAffx.25853.1.S1_at--303--7351Chr04:1205958..1205982 (25 bp)
GTGCAAAGTTTCAAGGTGACCATCA
LOC_Os04g02980
OsAffx.25853.1.S1_at--1044--8511Chr04:1206020..1206044 (25 bp)
TGGAAGCTTGGTGTGGCACGATGGC
LOC_Os04g02980
OsAffx.25853.1.S1_at--235--851Chr04:1206040..1206064 (25 bp)
ATGGCGGCATACACTGGGTTCGGAT
LOC_Os04g02980
Target Sequence 
CCAGGCCTCATATACGACATCGAACCATCAGATTACTTCAAGTTCTTCAACTGCATGGGAGGATTAGGCTCAGCGGACAA
TTGCACCACAGTGAAAGGATCACTTGCTGATTTGAACCTCCCGTCCATCGCCATCCCCAACCTCAGGACATTCCAGGCCA
CAACGCGCACCGTCACCAATGTTGGCCAGGCCAATGCCAGGTACAAGGCGTTCCTCTACACCCCTGCCGGTGTCGAGATG
ACCGTCGATCCGCCAGTGCTAGTGTTCAGCAAAGAGAAGAAGGTGCAAAGTTTCAAGGTGACCATCAAGGCGACGGGGAG
GCCAATTCAGGGGGACTATAGCTTTGGAAGCTTGGTGTGGCACGATGGCGGCATACACTGGGTTCGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis