Browse Element(s) Details


OsAffx.25863.1.S1_at

Description tigr:9632.m00403
TID=OsAffx.25863.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0491411/11transposon protein, putative, unclassified
LOC_Os04g046701/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04860NANA4+2328858..2331679retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04870NANA4+2334655..2335116retrotransposon protein, putative, unclassified
LOC_Os04g04880NANA4+2336394..2340601retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04890Os.45173.5.S1_x_at2/114+2345633..2346433retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04900NANA4+2346701..2351113retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04914OsAffx.25863.1.S1_at11/114+2354771..2359394transposon protein, putative, unclassified
LOC_Os04g04930NANA4+2361613..2364933hypothetical protein
LOC_Os04g04940Os.45212.1.S1_x_at1/114+2366600..2371300retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04950OsAffx.3724.1.S1_at11/114+2377413..2385554Copper amine oxidase, enzyme domain containing protein
LOC_Os04g04950OsAffx.16132.1.S1_at1/114+2377413..2385554Copper amine oxidase, enzyme domain containing protein
LOC_Os04g04950Os.49637.1.S1_at1/114+2377413..2385554Copper amine oxidase, enzyme domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25863.1.S1_at--821--7771Chr04:2358678..2358702 (25 bp)
GGTGCATCCGGCTGAGACATAGCTG
LOC_Os04g04914
OsAffx.25863.1.S1_at--639--3211Chr04:2358748..2358772 (25 bp)
CAAGGAGCTTTTTCTTGTCTACGAA
LOC_Os04g04914
OsAffx.25863.1.S1_at--710--2631Chr04:2358788..2358812 (25 bp)
AACCTCTACGAGTACTTGCACGAGA
LOC_Os04g04914
OsAffx.25863.1.S1_at--1075--211Chr04:2359030..2359054 (25 bp)
ATATTGGCTCGGCTCTATTCTACCT
LOC_Os04g04914
OsAffx.25863.1.S1_at--975--1671Chr04:2359096..2359120 (25 bp)
AGCCAGGCAATATACTCTTAGATGA
LOC_Os04g04914
OsAffx.25863.1.S1_at--448--6851Chr04:2359150..2359174 (25 bp)
GTTTGTCAAGAATTGCGAACCCGGA
LOC_Os04g04914
OsAffx.25863.1.S1_at--341--7431Chr04:2359228..2359252 (25 bp)
GTGTACAGACAATTGCCGTAGGCAC
LOC_Os04g04914
OsAffx.25863.1.S1_at--454--2892Chr04:2359255..2359279 (25 bp)
AAGGGTACATAGATCCACAGTGCAA
LOC_Os04g04914
OsAffx.25863.1.S1_at--141--2731Chr04:2359282..2359306 (25 bp)
AAGATGGCACGGTCAGGTTCAACTG
LOC_Os04g04914
OsAffx.25863.1.S1_at--592--2551Chr04:2359302..2359326 (25 bp)
AACTGCCCCTCAGATGTGTACAGCT
LOC_Os04g04914
OsAffx.25863.1.S1_at--206--4871Chr04:2359340..2359364 (25 bp)
GCTAGAGATCACGTGCACAGGCAAG
LOC_Os04g04914
Target Sequence 
GGTGCATCCGGCTGAGACATAGCTGGAACATCCTTCAATTCATGTGCGGCTGGTGCTGTAACATGGAGAACAAGGAGCTT
TTTCTTGTCTACGAATTGATGAAAAATGGCAACCTCTACGAGTACTTGCACGAGAGCGAGCTAATTAATTATATCCGATC
GATGATCAGGTACAAAATAGCCAAGAATATTGGCTCGGCTCTATTCTACCTACATCACGACTGCAAGCCATATATCCTGC
ACAGAGATATTAAGCCAGGCAATATACTCTTAGATGAGAATTTTAATGCCAAGCTTGCTGATTTTGGTTTGTCAAGAATT
GCGAACCCGGACAACAATGCAATGTTGCAAACAACTATGGTAGGCAATGCAGAAGAGTATGTAGGTGTACAGACAATTGC
CGTAGGCACGGAAGGGTACATAGATCCACAGTGCAAGAAAGATGGCACGGTCAGGTTCAACTGCCCCTCAGATGTGTACA
GCTTCGGCATTGTTCTGCTAGAGATCACGTGCACAGGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25863.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis