Browse Element(s) Details


OsAffx.25901.1.S1_at

Description tigr:9632.m00605
TID=OsAffx.25901.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0692011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06890OsAffx.25899.1.S1_at11/114+3618375..3619295hypothetical protein
LOC_Os04g06900OsAffx.13699.1.S1_at11/114+3622315..3625192expressed protein
LOC_Os04g06910OsAffx.25900.1.S1_at11/114+3635322..3637499hypothetical protein
LOC_Os04g06920OsAffx.25901.1.S1_at11/114+3642315..3645048hypothetical protein
LOC_Os04g06930OsAffx.13700.1.S1_at11/114+3648821..3649744hypothetical protein
LOC_Os04g06940OsAffx.20369.1.S1_at5/114+3650044..3651084retrotransposon protein, putative, unclassified, expressed
LOC_Os04g06950NANA4+3653912..3654481transposon protein, putative, unclassified
LOC_Os04g06960NANA4+3655273..3657954retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g06970OsAffx.13701.1.S1_at11/114+3658788..3660363hypothetical protein
LOC_Os04g06980OsAffx.22947.2.S1_x_at3/114+3665832..3668308retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06980OsAffx.22947.3.S1_x_at2/114+3665832..3668308retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06990OsAffx.25902.1.S1_at11/114+3669264..3671306hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25901.1.S1_at--158--8171Chr04:3642868..3642892 (25 bp)
GGAACACAAAGCGTCACTCCTGGTT
LOC_Os04g06920
OsAffx.25901.1.S1_at--854--2491Chr04:3642736..3642760 (25 bp)
AACTAGGCTGGAGCGTTGGCAACGA
LOC_Os04g06920
OsAffx.25901.1.S1_at--400--711Chr04:3642709..3642733 (25 bp)
ATGATGGAGATCAGGCCTCGTCATT
LOC_Os04g06920
OsAffx.25901.1.S1_at--128--91Chr04:3642659..3642683 (25 bp)
ATTGCCACTGATGTCTACCTCAAAC
LOC_Os04g06920
OsAffx.25901.1.S1_at--208--1651Chr04:3642601..3642625 (25 bp)
AGCGAGCTCTTGTGGAGGCCATCAA
LOC_Os04g06920
OsAffx.25901.1.S1_at--460--2451Chr04:3642484..3642508 (25 bp)
AACTACGTGCCGTGGAGCTTGGCAA
LOC_Os04g06920
OsAffx.25901.1.S1_at--40--8271Chr04:3642447..3642471 (25 bp)
GGCAGGAACATTTTGCGCGTCTTTT
LOC_Os04g06920
OsAffx.25901.1.S1_at--21--4571Chr04:3642433..3642457 (25 bp)
GCGCGTCTTTTTGGTTATCTGTATC
LOC_Os04g06920
OsAffx.25901.1.S1_at--217--2711Chr04:3642380..3642404 (25 bp)
AAGCTATCCACGTTTGAACACGCTC
LOC_Os04g06920
OsAffx.25901.1.S1_at--1042--5491Chr04:3642365..3642389 (25 bp)
GAACACGCTCCAAATGATCGCTGCA
LOC_Os04g06920
OsAffx.25901.1.S1_at--268--6391Chr04:3642350..3642374 (25 bp)
GATCGCTGCACTTTGGGTGGAGTTC
LOC_Os04g06920
Target Sequence 
GGAACACAAAGCGTCACTCCTGGTTCATCTCCATCCCAGCGGCTGTCATGCGCACGGAGGCGACAAACCTCGACGACGAG
GTGGGCCGACACCGTGGACGCGTGACGCTCCGTCGATGGGGTTTGTTCGAGGAACTAGGCTGGAGCGTTGGCAACGAGGA
TGATGGAGATCAGGCCTCGTCATTCGCCAGCAGCATCCTGCTCTGGCACATTGCCACTGATGTCTACCTCAAACTGTACA
GGAAGGAGATCGACCAGGACGAAGGGCAGCGAGCTCTTGTGGAGGCCATCAAGACGCTCGCCAACTACATGTTTTTCCTC
CTCGTTGTACGTCCCCAGATGCTGCCTGCTGGCTCCGTCGAACAGCAACAACAGTATGCCACCAAACTACGTGCCGTGGA
GCTTGGCAAGAGTGATTTGTTGGCAGGAACATTTTGCGCGTCTTTTTGGTTATCTGTATCCAGGATTGTCCGAGGAATGA
TTGGCAGGAAGCTATCCACGTTTGAACACGCTCCAAATGATCGCTGCACTTTGGGTGGAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis