Browse Element(s) Details


OsAffx.25903.3.S1_at

Description gb:NM_192998.1
DB_XREF= gi:34913079
GEN=P0672C09.21
TID=OsAffx.25903.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0672C09.21 (P0672C09.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g170001/11Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os03g274001/11transposon protein, putative, unclassified
LOC_Os02g466801/11P-glycoprotein, putative, expressed
LOC_Os04g070101/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16970OsAffx.6308.1.S1_s_at11/119+10372584..10374583hypothetical protein
LOC_Os09g16980OsAffx.6309.1.S1_at10/119+10377531..10380849Calcium binding EGF domain containing protein
LOC_Os09g16990OsAffx.29881.1.S1_at11/119+10384915..10385752expressed protein
LOC_Os09g17000Os.39637.1.A1_s_at11/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000OsAffx.29883.1.S1_at10/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000Os.39637.1.A1_at8/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000OsAffx.25903.3.S1_at1/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17010OsAffx.6310.1.S1_at11/119+10406388..10409702lectin receptor kinase 1, putative
LOC_Os09g17010OsAffx.17536.1.S1_at1/119+10406388..10409702lectin receptor kinase 1, putative
LOC_Os09g17020NANA9+10411381..10415912retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0008361biological_processregulation of cell size
GO:0009637biological_processresponse to blue light
GO:0009639biological_processresponse to red or far red light
GO:0009640biological_processphotomorphogenesis
GO:0009733biological_processresponse to auxin stimulus
GO:0009958biological_processpositive gravitropism
GO:0043481biological_processanthocyanin accumulation in tissues in response to UV light
GO:0005739cellular_componentmitochondrion
GO:0031225cellular_componentanchored to membrane
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25903.3.S1_at--537--6431Chr01:22813995..22814019 (25 bp)
GATCATCTCAAGTCTCGATCGAGGG
NONE
OsAffx.25903.3.S1_at--259--9511Chr01:22813983..22814007 (25 bp)
TCTCGATCGAGGGAAAGCAGTTAAA
NONE
OsAffx.25903.3.S1_at--278--11Chr01:22813970..22813994 (25 bp)
AAAGCAGTTAAATCCAAATCCAATG
NONE
OsAffx.25903.3.S1_at--484--4371Chr01:22813957..22813981 (25 bp)
CCAAATCCAATGAACTGACCCTGAC
NONE
OsAffx.25903.3.S1_at--90--3011Chr01:22813949..22813973 (25 bp)
AATGAACTGACCCTGACAATCCGAT
NONE
OsAffx.25903.3.S1_at--908--5811Chr01:22813941..22813965 (25 bp)
GACCCTGACAATCCGATCTAGGCGA
NONE
OsAffx.25903.3.S1_at--983--431Chr01:22813926..22813950 (25 bp)
ATCTAGGCGAGATATTTTCTGGTGG
NONE
OsAffx.25903.3.S1_at--88--591NONE
ATCCAATGCAAGCAACCTCAGGTCA
NONE
OsAffx.25903.3.S1_at--403--5171NONE
GCAAGCAACCTCAGGTCACCACGTA
NONE
OsAffx.25903.3.S1_at--617--391Chr01:22811469..22811950 (25 bp)
ATCACCGATGGGACTGGAGGCAGCC
NONE
OsAffx.25903.3.S1_at--131--37330Chr11:5532279..5532779 (25 bp)
CGGCCGTCCCGGTTGATGACACCAA
NONE
Target Sequence 
GATCATCTCAAGTCTCGATCGAGGGAAAGCAGTTAAATCCAAATCCAATGAACTGACCCTGACAATCCGATCTAGGCGAG
ATATTTTCTGGTGGATCCAATGCAAGCAACCTCAGGTCACCACGTACGGTGGGTTAGGTGTCCGCTTACAGGTGCCCACC
TACCCGCATTTATGGCGACCCAAGCGGTCGCGCCACGCCGCATTTAATGTGGCGTGCAGTGTACTCAACCGGTCTGTGAC
CGGTCGAATCACCGATGGGACTGGAGGCAGCCGACGGCGGCGGGATGGGGGATGGGCGCGGGCTGGCAGCGGCCGGCCGG
CGGTGGCGGGATGGAGGCGGCCGGGCGCGGGCTGGCGGCAGCCAGATCCGGCCAGAGGGGAAGCGGCGGGATGGAGGACG
GCCGGCGGCGGCCCGGCGCGGGCCGGCGGGATGGAGGCCGGTCGCCGGCGGCCTCGCCCTCCCCTCCCCCAGATCCGGCC
GGAGGGGAAGCGGCGAGATGGGTGGCCGGCCGGCGGCGGGATGGGAGGCCGGCCGTCCCGGTTGATGACACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25903.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis