Browse Element(s) Details


OsAffx.25936.1.S1_at

Description gb:NM_187819.1
DB_XREF= gi:34902723
GEN=P0710F09.26
TID=OsAffx.25936.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) retrotransposable elements TNP2-like (P0710F09.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g228609/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g376308/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g238008/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g062808/11hypothetical protein
LOC_Os09g042608/11retrotransposon protein, putative, unclassified
LOC_Os06g166708/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g236807/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g112607/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g592307/11retrotransposon protein, putative, unclassified
LOC_Os08g422507/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g458907/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g500607/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g142607/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g249607/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g276107/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g397407/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g242947/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g458647/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g449906/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g168903/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g637403/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g083902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g043161/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g330701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g128301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g138501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g299501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g389201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g246601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g093301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22800NANA7+12862728..12864535retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g22810OsAffx.19542.3.S1_x_at2/117+12865619..12866554retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g22820OsAffx.14826.2.S1_at1/117+12869844..12872325Transposable element protein, putative, Retrotrans_gag
LOC_Os07g22830NANA7+12875247..12875930retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22840OsAffx.16365.1.S1_at11/117+12879998..12881739Anaphase promoting complex subunit 11, putative
LOC_Os07g22840OsAffx.16365.1.S1_x_at11/117+12879998..12881739Anaphase promoting complex subunit 11, putative
LOC_Os07g22840OsAffx.23616.1.S1_at1/117+12879998..12881739Anaphase promoting complex subunit 11, putative
LOC_Os07g22850OsAffx.28544.2.S1_x_at11/117+12883052..12884397Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os07g22860OsAffx.25936.1.S1_s_at11/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22860OsAffx.25936.7.S1_s_at9/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22860OsAffx.25936.1.S1_at9/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22860OsAffx.25936.2.S1_x_at4/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22860OsAffx.25936.5.S1_x_at3/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22870NANA7+12893981..12894424hypothetical protein
LOC_Os07g22880Os.10827.1.S1_x_at7/117+12894838..12898385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22880Os.46055.2.S1_x_at6/117+12894838..12898385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22890OsAffx.16366.1.S1_at11/117+12900310..12902163hypothetical protein
LOC_Os07g22890OsAffx.16366.2.S1_s_at11/117+12900310..12902163hypothetical protein
LOC_Os07g22900NANA7+12903581..12904048hypothetical protein
LOC_Os07g22910Os.27775.1.A1_at3/117+12904553..12906955hypothetical protein
LOC_Os07g22920OsAffx.22238.2.S1_at9/117+12908385..12910176hypothetical protein
LOC_Os07g22920OsAffx.22238.1.S1_at2/117+12908385..12910176hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25936.1.S1_at--1105--4791NONE
GCTAATGGCGAATAAGCTAATTTCA
NONE
OsAffx.25936.1.S1_at--471--8391NONE
GGCGAATAAGCTAATTTCAATACCT
NONE
OsAffx.25936.1.S1_at--1020--4832Chr10:9230444..9230464 (21 bp)
GCTAATTTCAATACCTACATTGCTA
NONE
OsAffx.25936.1.S1_at--205--199Chr09:2253067..2253091 (25 bp)
ATTTCAATACCTACATTGCTATTCA
LOC_Os09g04260
OsAffx.25936.1.S1_at--1003--30955Chr12:17316895..17317298 (25 bp)
AATACCTACATTGCTATTCAAAACG
NONE
OsAffx.25936.1.S1_at--328--42957Chr12:17317279..17317302 (24 bp)
CCTACATTGCTATTCAAAACGTGCT
NONE
OsAffx.25936.1.S1_at--740--170Chr12:17317283..17317307 (25 bp)
ATTGCTATTCAAAACGTGCTAATTA
NONE
OsAffx.25936.1.S1_at--613--104960Chr12:17317290..17317314 (25 bp)
TTCAAAACGTGCTAATTAACCTCTT
NONE
OsAffx.25936.1.S1_at--273--32761Chr12:17317292..17317316 (25 bp)
CAAAACGTGCTAATTAACCTCTTAT
NONE
OsAffx.25936.1.S1_at--426--19162Chr12:17317296..17317320 (25 bp)
ACGTGCTAATTAACCTCTTATTTAT
NONE
OsAffx.25936.1.S1_at--241--73163Chr12:17317298..17317322 (25 bp)
GTGCTAATTAACCTCTTATTTATTA
NONE
Target Sequence 
GCTAATGGCGAATAAGCTAATTTCAATACCTACATTGCTATTCAAAACGTGCTAATTAACCTCTTATTTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis