Browse Element(s) Details


OsAffx.25940.1.S1_at

Description tigr:9632.m00820
TID=OsAffx.25940.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0951011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09460OsAffx.9532.1.S1_at5/114+5044791..5049783hypothetical protein
LOC_Os04g09460OsAffx.9532.1.S1_x_at2/114+5044791..5049783hypothetical protein
LOC_Os04g09460OsAffx.20947.1.S1_x_at1/114+5044791..5049783hypothetical protein
LOC_Os04g09460OsAffx.9652.1.S1_x_at1/114+5044791..5049783hypothetical protein
LOC_Os04g09470OsAffx.22699.1.S1_x_at1/114+5050590..5056287retrotransposon protein, putative, unclassified
LOC_Os04g09480Os.27691.1.S1_x_at3/114+5059343..5063896retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09490Os.27691.1.S1_x_at1/114+5064152..5065304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09490Os.27691.2.S1_x_at1/114+5064152..5065304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09500OsAffx.13733.1.S1_at11/114+5068557..5069099hypothetical protein
LOC_Os04g09510OsAffx.25940.1.S1_at11/114+5070425..5072204hypothetical protein
LOC_Os04g09510OsAffx.22250.2.S1_x_at1/114+5070425..5072204hypothetical protein
LOC_Os04g09510OsAffx.20947.1.S1_x_at1/114+5070425..5072204hypothetical protein
LOC_Os04g09510OsAffx.9652.1.S1_x_at1/114+5070425..5072204hypothetical protein
LOC_Os04g09510OsAffx.18381.1.S1_at1/114+5070425..5072204hypothetical protein
LOC_Os04g09520OsAffx.25941.1.S1_at11/114+5075638..5078657Protease inhibitor/seed storage/LTP family protein
LOC_Os04g09520Os.34818.1.S1_at1/114+5075638..5078657Protease inhibitor/seed storage/LTP family protein
LOC_Os04g09530Os.24765.1.A1_at3/114+5092099..5093612pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25940.1.S1_at--865--9191Chr04:5071344..5071368 (25 bp)
TCCTATTCCCGAATCAAGTGAGCAT
LOC_Os04g09510
OsAffx.25940.1.S1_at--1104--1531Chr04:5071364..5071388 (25 bp)
AGCATACCCTATCGGCTGCAGGAAG
LOC_Os04g09510
OsAffx.25940.1.S1_at--805--1651Chr04:5071425..5071799 (25 bp)
AGCCCATGCTATCCCTAAAGCCAAA
LOC_Os04g09510
OsAffx.25940.1.S1_at--786--4031Chr04:5071811..5071835 (25 bp)
CGATCGCCGTGAGAGAAGGGACCTT
LOC_Os04g09510
OsAffx.25940.1.S1_at--928--4311Chr04:5071832..5071856 (25 bp)
CCTTGAGGTGACCATCCAAGTTAGC
LOC_Os04g09510
OsAffx.25940.1.S1_at--852--9731Chr04:5071930..5071954 (25 bp)
TCAATCGGCTGAACGCCCGGACGAT
LOC_Os04g09510
OsAffx.25940.1.S1_at--671--4191Chr04:5071945..5071969 (25 bp)
CCCGGACGATAGAGCTCTTGGCTGA
LOC_Os04g09510
OsAffx.25940.1.S1_at--506--5191Chr04:5071976..5072000 (25 bp)
GCAATGCAGTGCACAAATCACTCTT
LOC_Os04g09510
OsAffx.25940.1.S1_at--276--5491Chr04:5072004..5072028 (25 bp)
GAACAAAAGCTTGTCGACTTACCGA
LOC_Os04g09510
OsAffx.25940.1.S1_at--355--9971Chr04:5072023..5072047 (25 bp)
TACCGAAAGCCATTGAAGACCAGAA
LOC_Os04g09510
OsAffx.25940.1.S1_at--789--751Chr04:5072065..5072089 (25 bp)
ATGTCAAGCACTTGACTGACCTGAC
LOC_Os04g09510
Target Sequence 
TCCTATTCCCGAATCAAGTGAGCATACCCTATCGGCTGCAGGAAGCCATCACATAGAAGAAGAAGAAGAAGTAGCAGCAC
CAGCCCATGCTATCCCTAAAGCCAAACAAAGGATTGTCGATCGCCGTGAGAGAAGGGACCTTGAGGTGACCATCCAAGTT
AGCAGGGCTTCTATCAACGAAGAGAAAGCTAAACTTGATGAATTAGAGGCTGGCCCAAGTTCTACTCAAGCTAACATCAA
TCGGCTGAACGCCCGGACGATAGAGCTCTTGGCTGAGTTGGAGCAATGCAGTGCACAAATCACTCTTGAAGAACAAAAGC
TTGTCGACTTACCGAAAGCCATTGAAGACCAGAAGTCAAAATTAAAAGCATATGTCAAGCACTTGACTGACCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis