Browse Element(s) Details


OsAffx.25948.1.S1_at

Description tigr:9632.m00871
TID=OsAffx.25948.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0999011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09950OsAffx.13741.1.S1_at11/114+5337009..5337800hypothetical protein
LOC_Os04g09960OsAffx.25947.1.S1_at10/114+5338317..5339748hypothetical protein
LOC_Os04g09969NANA4+5344752..5344988NA
LOC_Os04g09980Os.35344.3.S1_x_at11/114+5346825..5352543transposon protein, putative, Mutator sub-class
LOC_Os04g09980Os.35344.18.S1_x_at8/114+5346825..5352543transposon protein, putative, Mutator sub-class
LOC_Os04g09980OsAffx.22940.5.S1_x_at3/114+5346825..5352543transposon protein, putative, Mutator sub-class
LOC_Os04g09990OsAffx.25948.1.S1_at11/114+5357271..5359192hypothetical protein
LOC_Os04g10000NANA4+5360317..5361507oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g10010Os.7434.1.S1_at11/114+5365731..5367224oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g10020Os.47463.1.S1_x_at6/114+5368855..5372552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10020Os.14491.2.S1_x_at4/114+5368855..5372552transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10030NANA4+5375935..5379267transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g10040OsAffx.8939.1.S1_x_at5/114+5382592..5384370hypothetical protein
LOC_Os04g10040OsAffx.8939.1.S1_at5/114+5382592..5384370hypothetical protein
LOC_Os04g10040OsAffx.1436.1.S1_x_at1/114+5382592..5384370hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25948.1.S1_at--22--711Chr04:5358912..5358936 (25 bp)
ATGAGTTATATGTACACGAGATGGT
LOC_Os04g09990
OsAffx.25948.1.S1_at--11--7531Chr04:5358952..5358976 (25 bp)
GTGGACAGAAGACCCGACAGAGCAT
LOC_Os04g09990
OsAffx.25948.1.S1_at--88--4231Chr04:5358965..5358989 (25 bp)
CCGACAGAGCATTGTGAGGGTGATA
LOC_Os04g09990
OsAffx.25948.1.S1_at--165--6151Chr04:5358980..5359004 (25 bp)
GAGGGTGATACAGTCGTCGAAGATA
LOC_Os04g09990
OsAffx.25948.1.S1_at--127--7231Chr04:5358995..5359019 (25 bp)
GTCGAAGATATTTTTGTGCAGCCAA
LOC_Os04g09990
OsAffx.25948.1.S1_at--50--10831Chr04:5359008..5359032 (25 bp)
TTGTGCAGCCAAAATCCATGAAAAC
LOC_Os04g09990
OsAffx.25948.1.S1_at--1019--3231Chr04:5359032..5359056 (25 bp)
CAAGCAAGGCAGACGTTGTGACACT
LOC_Os04g09990
OsAffx.25948.1.S1_at--87--1391Chr04:5359042..5359066 (25 bp)
AGACGTTGTGACACTGCAGGCACTG
LOC_Os04g09990
OsAffx.25948.1.S1_at--632--5011Chr04:5359057..5359081 (25 bp)
GCAGGCACTGCTAGTATCAACCAAT
LOC_Os04g09990
OsAffx.25948.1.S1_at--1060--2211Chr04:5359084..5359108 (25 bp)
AAATTGTGAGATTGCTACCAGGAAT
LOC_Os04g09990
OsAffx.25948.1.S1_at--952--5351Chr04:5359138..5359162 (25 bp)
GAAGATGATCTATGCTCTGAAGACG
LOC_Os04g09990
Target Sequence 
ATGAGTTATATGTACACGAGATGGTAGAGGAGAAAAAGAGGTGGACAGAAGACCCGACAGAGCATTGTGAGGGTGATACA
GTCGTCGAAGATATTTTTGTGCAGCCAAAATCCATGAAAACAAGCAAGGCAGACGTTGTGACACTGCAGGCACTGCTAGT
ATCAACCAATATAAATTGTGAGATTGCTACCAGGAATAAGAAATGTAAGAGATACCTATGGGTGATGAAGATGATCTATG
CTCTGAAGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis