Browse Element(s) Details


OsAffx.25959.2.S1_at

Description tigr:9632.m00919
TID=OsAffx.25959.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=amidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1046011/11Amidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10420Os.54559.1.S1_at11/114+5635855..5646506expressed protein
LOC_Os04g10420Os.37514.1.S1_at11/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.3763.1.S1_s_at11/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.23335.1.S1_x_at8/114+5635855..5646506expressed protein
LOC_Os04g10420OsAffx.20160.1.S1_x_at1/114+5635855..5646506expressed protein
LOC_Os04g10420Os.54153.1.S1_at1/114+5635855..5646506expressed protein
LOC_Os04g10434Os.53788.1.S1_at11/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10434OsAffx.23696.1.S1_x_at1/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10434OsAffx.988.1.S1_at1/114+5649164..5655744Amidase family protein, expressed
LOC_Os04g10450OsAffx.13751.1.S1_at10/114+5663294..5664870hypothetical protein
LOC_Os04g10450OsAffx.28563.1.S1_x_at1/114+5663294..5664870hypothetical protein
LOC_Os04g10460OsAffx.25959.2.S1_at11/114+5666494..5669400Amidase family protein, expressed
LOC_Os04g10470NANA4+5670693..5671064hypothetical protein
LOC_Os04g10480OsAffx.13753.1.S1_at11/114+5680124..5680792hypothetical protein
LOC_Os04g10490OsAffx.13754.1.S1_at11/114+5684894..5685166hypothetical protein
LOC_Os04g10500OsAffx.3764.1.S1_at11/114+5686035..5687404hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004040molecular_functionamidase activity
GO:0017068molecular_functionglutamyl-tRNA(Gln) amidotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25959.2.S1_at--330--6191Chr04:5668325..5668348 (24 bp)
GAGGAAACACGGAGCCCTGGTGATA
LOC_Os04g10460
OsAffx.25959.2.S1_at--1056--2191Chr04:5668364..5668388 (25 bp)
ACAACAAATTTGTCTGCCGCGCAGG
LOC_Os04g10460
OsAffx.25959.2.S1_at--991--4511Chr04:5668379..5668403 (25 bp)
GCCGCGCAGGATGTTCTTTATTCCA
LOC_Os04g10460
OsAffx.25959.2.S1_at--760--4271Chr04:5668486..5668510 (25 bp)
CCTCGCCGATGTGGTAGCATTCAAT
LOC_Os04g10460
OsAffx.25959.2.S1_at--594--5691Chr04:5668851..5668875 (25 bp)
GACTTCAAGATTTTGGCCAGCCCGA
LOC_Os04g10460
OsAffx.25959.2.S1_at--1019--4531Chr04:5668870..5668894 (25 bp)
GCCCGACCTGATTGCAGCTCAAAAA
LOC_Os04g10460
OsAffx.25959.2.S1_at--593--2411Chr04:5668917..5668941 (25 bp)
AAAAAGCGGCAATCCAGCGTCTCAA
LOC_Os04g10460
OsAffx.25959.2.S1_at--4--5091Chr04:5668981..5669005 (25 bp)
GCACCAGCTAGATGCGATTGTCACC
LOC_Os04g10460
OsAffx.25959.2.S1_at--1071--4371Chr04:5669007..5669031 (25 bp)
CCAACTCTCATGCATCTAGCTTTTT
LOC_Os04g10460
OsAffx.25959.2.S1_at--492--451Chr04:5669020..5669044 (25 bp)
ATCTAGCTTTTTTGCCATCGGCGGC
LOC_Os04g10460
OsAffx.25959.2.S1_at--717--1731Chr04:5669089..5669113 (25 bp)
ACCATTTGGTATCTGCTTCGGTGGG
LOC_Os04g10460
Target Sequence 
GAGGAAACACGGAGCCCTGGTGATAGAGAATATCAACATCACAACAAATTTGTCTGCCGCGCAGGATGTTCTTTATTCCA
ACGAGAATATCGCATTGCAAGCAGAGTTCAAGTTAAGCCTAAACGCTTATTTGTCAGACTTGCTGTATTCCCCAGTTCAT
TCCCTCGCCGATGTGGTAGCATTCAATAATGCACATCCTGTGGAGGAGAGACTTCAAGATTTTGGCCAGCCCGACCTGAT
TGCAGCTCAAAAAACCAATGGCATTGGTCCAGTGGAAAAAGCGGCAATCCAGCGTCTCAACGAGCTGTCAGCTGATGGAT
TGGAGAATCTGATGAGGATGCACCAGCTAGATGCGATTGTCACCCCCAACTCTCATGCATCTAGCTTTTTTGCCATCGGC
GGCATGCCCGCGATCACCGTGCCGGCTGGGTACGATGGTCATGGAGTACCATTTGGTATCTGCTTCGGTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25959.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis