Browse Element(s) Details


OsAffx.25982.4.S1_at

Description tigr:9632.m01039
TID=OsAffx.25982.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AHM2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1164011/11Methyl-CpG binding domain containing protein
LOC_Os04g115101/11Methyl-CpG binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11610NANA4+6332806..6335591hypothetical protein
LOC_Os04g11620Os.1709.1.S1_x_at7/114+6336923..6343404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11620Os.17546.2.S1_x_at1/114+6336923..6343404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11620Os.31497.2.S1_x_at1/114+6336923..6343404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11620OsAffx.10148.1.S1_x_at1/114+6336923..6343404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g11630OsAffx.13774.1.S1_at9/114+6352612..6356438hypothetical protein
LOC_Os04g11630Os.27004.1.A1_at1/114+6352612..6356438hypothetical protein
LOC_Os04g11640OsAffx.25982.4.S1_at11/114+6358768..6362321Methyl-CpG binding domain containing protein
LOC_Os04g11660Os.54805.2.S1_at11/114+6364645..6368961F-box protein interaction domain containing protein, expressed
LOC_Os04g11660Os.54805.1.S1_at11/114+6364645..6368961F-box protein interaction domain containing protein, expressed
LOC_Os04g11670OsAffx.13777.1.S1_at11/114+6381228..6382217hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25982.4.S1_at--408--9971Chr04:6360487..6360511 (25 bp)
TAGAAAGACAAATACGGGCGGAATT
LOC_Os04g11640
OsAffx.25982.4.S1_at--814--71Chr04:6360623..6360647 (25 bp)
ATTCCGTACCATGAGGTCTGCCGCA
LOC_Os04g11640
OsAffx.25982.4.S1_at--343--8891Chr04:6360634..6360658 (25 bp)
TGAGGTCTGCCGCACTCTACGTGGA
LOC_Os04g11640
OsAffx.25982.4.S1_at--146--6691Chr04:6361074..6361098 (25 bp)
GTTGCGCACACGATCATCAAAACAC
LOC_Os04g11640
OsAffx.25982.4.S1_at--323--371Chr04:6361089..6361113 (25 bp)
ATCAAAACACGAAAAGCTAGCACTG
LOC_Os04g11640
OsAffx.25982.4.S1_at--1060--2031Chr04:6361125..6361149 (25 bp)
ACTTAGCGATGAGCAAGGTTCATCT
LOC_Os04g11640
OsAffx.25982.4.S1_at--1012--4052Chr04:6361131..6361154 (24 bp)
CGATGAGCAAGGTTCATCTAGCGGG
LOC_Os04g11640
OsAffx.25982.4.S1_at--953--7711Chr04:6362162..6362186 (25 bp)
GGTGGCAGCTCTACTAGAGATGGAT
LOC_Os04g11640
OsAffx.25982.4.S1_at--568--3731Chr04:6362172..6362196 (25 bp)
CTACTAGAGATGGATTGCTGGTGGT
LOC_Os04g11640
OsAffx.25982.4.S1_at--262--1211Chr04:6362222..6362246 (25 bp)
AGTTTCTTTGGTGGCTGTGCTCGTG
LOC_Os04g11640
OsAffx.25982.4.S1_at--437--1251Chr04:6362264..6362288 (25 bp)
AGTTGGCCACACGGCGCTTGAGGCA
LOC_Os04g11640
Target Sequence 
TAGAAAGACAAATACGGGCGGAATTAGAAGAGACCGGCACTACACCGATCCCATTAAAAATTATGTATTCCGTACCATGA
GGTCTGCCGCACTCTACGTGGAAACAGGGAAAGTAACAATACGTGCCTTTGTTCAAAAGACAAGTGTCCATGAGGTGTAC
TCTTTTGAAAAGTTCACACATTTGCATGAAAGCTTACAGAAAAGACTAAACTTAGGAAGGACGAACCAGTTGCGCACACG
ATCATCAAAACACGAAAAGCTAGCACTGAAAGAAGAGATACTTAGCGATGAGCAAGGTTCATCTAGCGGGGTGGCAGCTC
TACTAGAGATGGATTGCTGGTGGTGGTCTAGGCAGTTGTGGTTGGAGGGAGTTTCTTTGGTGGCTGTGCTCGTGGTGGCA
GCTGTGGGTGGAGTTGGCCACACGGCGCTTGAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25982.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis