Browse Element(s) Details


OsAffx.25991.1.S1_at

Description tigr:9632.m01077
TID=OsAffx.25991.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1202011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g11990OsAffx.25990.1.S1_at11/114+6555938..6559384hypothetical protein
LOC_Os04g12000OsAffx.8479.1.S1_at10/114+6566958..6571307retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12010Os.49562.1.A1_at11/114+6573208..6575844HGA1, putative, expressed
LOC_Os04g12020OsAffx.25991.1.S1_at11/114+6578295..6579432hypothetical protein
LOC_Os04g12030Os.31312.2.S1_x_at5/114+6582691..6585950retrotransposon protein, putative, unclassified
LOC_Os04g12030Os.31312.5.S1_x_at4/114+6582691..6585950retrotransposon protein, putative, unclassified
LOC_Os04g12040NANA4+6586741..6592739retrotransposon protein, putative, unclassified
LOC_Os04g12050OsAffx.3772.1.S1_at11/114+6602237..6603133hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25991.1.S1_at--972--5351Chr04:6578556..6578580 (25 bp)
GAAGAGCTCTAAGCGTTTTCTCAGC
LOC_Os04g12020
OsAffx.25991.1.S1_at--578--1631Chr04:6578545..6578569 (25 bp)
AGCGTTTTCTCAGCGCAATAAAGCG
LOC_Os04g12020
OsAffx.25991.1.S1_at--43--3091Chr04:6578529..6578553 (25 bp)
AATAAAGCGGGCTGCAAGCTCGCGC
LOC_Os04g12020
OsAffx.25991.1.S1_at--1016--9691Chr04:6578504..6578528 (25 bp)
TCACATCACTATTCCTACAGCTTGA
LOC_Os04g12020
OsAffx.25991.1.S1_at--1069--10211Chr04:6578495..6578519 (25 bp)
TATTCCTACAGCTTGAGTGCGTGCC
LOC_Os04g12020
OsAffx.25991.1.S1_at--581--6111Chr04:6578481..6578505 (25 bp)
GAGTGCGTGCCCGTCCAATGAGGAC
LOC_Os04g12020
OsAffx.25991.1.S1_at--1053--611Chr04:6578441..6578465 (25 bp)
ATGCTGAGTCATATGGCCAAGTGCC
LOC_Os04g12020
OsAffx.25991.1.S1_at--401--6171Chr04:6578409..6578433 (25 bp)
GAGGATCAAGGCCAAACTTTCCATC
LOC_Os04g12020
OsAffx.25991.1.S1_at--472--9631Chr04:6578356..6578380 (25 bp)
TCAGGATGTGCAGACCTACAACCTC
LOC_Os04g12020
OsAffx.25991.1.S1_at--263--9851Chr04:6578340..6578364 (25 bp)
TACAACCTCCTCAGGGATCGGGTGT
LOC_Os04g12020
OsAffx.25991.1.S1_at--999--7651Chr04:6578327..6578351 (25 bp)
GGGATCGGGTGTTCACTCATACGCG
LOC_Os04g12020
Target Sequence 
GAAGAGCTCTAAGCGTTTTCTCAGCGCAATAAAGCGGGCTGCAAGCTCGCGCTCACATCACTATTCCTACAGCTTGAGTG
CGTGCCCGTCCAATGAGGACGCAAGAGTGAAGGGCATGCTGAGTCATATGGCCAAGTGCCAATGGATGAGGATCAAGGCC
AAACTTTCCATCCCGACTCCAAGCTGGGCTTGCAAAGAGATCAGGATGTGCAGACCTACAACCTCCTCAGGGATCGGGTG
TTCACTCATACGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis