Browse Element(s) Details


OsAffx.25998.1.S1_x_at

Description tigr:9632.m01097
TID=OsAffx.25998.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1222011/11receptor-like protein kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12200OsAffx.25997.1.S1_at10/114+6698571..6700127hypothetical protein
LOC_Os04g12210Os.31613.1.S1_at1/114+6702073..6713823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12210Os.17297.1.S1_at1/114+6702073..6713823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12220OsAffx.25998.1.S1_x_at11/114+6723575..6724569receptor-like protein kinase, putative
LOC_Os04g12220OsAffx.25998.1.S1_at11/114+6723575..6724569receptor-like protein kinase, putative
LOC_Os04g12220OsAffx.3773.1.S1_x_at4/114+6723575..6724569receptor-like protein kinase, putative
LOC_Os04g12230Os.10827.1.S1_x_at8/114+6725273..6728329transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g12230Os.46055.2.S1_x_at6/114+6725273..6728329transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g12240NANA4+6730637..6739770transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g12250NANA4+6745316..6750733retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005576cellular_componentextracellular region
GO:0016298molecular_functionlipase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25998.1.S1_x_at--526--4071Chr04:6724069..6724093 (25 bp)
CGAGGGCACCTACCGCCAGGTGTTC
LOC_Os04g12220
OsAffx.25998.1.S1_x_at--230--4431Chr04:6724055..6724079 (25 bp)
GCCAGGTGTTCTACCACTACAAGAA
LOC_Os04g12220
OsAffx.25998.1.S1_x_at--284--3471Chr04:6724053..6724077 (25 bp)
CAGGTGTTCTACCACTACAAGAACG
LOC_Os04g12220
OsAffx.25998.1.S1_x_at--430--2211Chr04:6724037..6724061 (25 bp)
ACAAGAACGTCTCCGACAAGGTCGC
LOC_Os04g12220
OsAffx.25998.1.S1_x_at--794--2891Chr04:6724020..6724044 (25 bp)
AAGGTCGCCTTCGAGAGGACGTACT
LOC_Os04g12220
OsAffx.25998.1.S1_x_at--89--7191Chr04:6723949..6723973 (25 bp)
GTCGGCTGCGCGGATGTTCGCCACG
LOC_Os04g12220
OsAffx.25998.1.S1_x_at--490--4251Chr04:6723905..6723929 (25 bp)
CCGGCTTGGGCAACGGGACGATGTA
LOC_Os04g12220
OsAffx.25998.1.S1_x_at--909--811Chr04:6723876..6723900 (25 bp)
ATGGTGCAGTGCATGAGAGACCGCA
LOC_Os04g12220
OsAffx.25998.1.S1_x_at--926--9851Chr04:6723762..6723786 (25 bp)
TACAACTGCTACCTACGCGTCGAGA
LOC_Os04g12220
OsAffx.25998.1.S1_x_at--943--2491Chr04:6723759..6723783 (25 bp)
AACTGCTACCTACGCGTCGAGATAT
LOC_Os04g12220
OsAffx.25998.1.S1_x_at--984--4831Chr04:6723755..6723779 (25 bp)
GCTACCTACGCGTCGAGATATACAC
LOC_Os04g12220
Target Sequence 
CGAGGGCACCTACCGCCAGGTGTTCTACCACTACAAGAACGTCTCCGACAAGGTCGCCTTCGAGAGGACGTACTACGCGC
TGATGACCCGCCCCACGGCGGCGGCCGCGGACGGCTCGGCGTCGGCTGCGCGGATGTTCGCCACGGGGCAGGCGGTGTAC
GCCCCCGGCTTGGGCAACGGGACGATGTACGGGATGGTGCAGTGCATGAGAGACCGCACGGCGGCGGAGTGCGGCCGGTG
CTTGAACGACTCGGTGCAGCAGCTGCCGAGCTGCTGCTGGGGGCACCAGGGCGGGGTGGTGCTCGGCTACAACTGCTACC
TACGCGTCGAGATATACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25998.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis