Browse Element(s) Details


OsAffx.2602.2.S1_at

Description tigr:9630.m01281
TID=OsAffx.2602.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1386011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13840Os.11467.1.S1_at10/112+7491241..7497864Citrate synthase, glyoxysomal precursor, putative, expressed
LOC_Os02g13850Os.27983.1.S2_at11/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850Os.27983.1.S1_at11/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850OsAffx.8723.1.S1_at2/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850Os.8413.1.S1_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850OsAffx.21108.1.S1_x_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850Os.54405.1.S1_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850OsAffx.16280.1.S1_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13860OsAffx.2602.2.S1_at11/112+7513963..7514649hypothetical protein
LOC_Os02g13870Os.2678.1.S1_at11/112+7516220..7519336Aquaporin NIP1.2, putative, expressed
LOC_Os02g13880OsAffx.24236.1.S1_at11/112+7524306..7524563expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2602.2.S1_at--247--9071Chr02:7514589..7514613 (25 bp)
TGCTTGATCAATGTCGGCACCGACG
LOC_Os02g13860
OsAffx.2602.2.S1_at--675--271Chr02:7514545..7514569 (25 bp)
ATATGTCGAGCGAGTAGCGGCCGTA
LOC_Os02g13860
OsAffx.2602.2.S1_at--562--3915Chr08:25626818..25626837 (20 bp)
CGGCCGTAGCCGAAGACGTTGTAGA
NONE
OsAffx.2602.2.S1_at--494--3471Chr02:7514468..7514492 (25 bp)
CAGGCCTTTCTCAGGGAGCCTTCCT
LOC_Os02g13860
OsAffx.2602.2.S1_at--385--3753Chr07:453554..453578 (25 bp)
CTCAGGGAGCCTTCCTCCTTGTGGC
NONE
OsAffx.2602.2.S1_at--450--7533Chr07:453574..453671 (25 bp)
GTGGCGGCCCCAGTAGACGACGAGG
NONE
OsAffx.2602.2.S1_at--1098--4631Chr02:7514386..7514410 (25 bp)
GCGTAGCGAGGAGCAGCTCCTGCTA
LOC_Os02g13860
OsAffx.2602.2.S1_at--3--991Chr02:7514356..7514380 (25 bp)
AGGAGTGCATGCACGAGGCCCATGT
LOC_Os02g13860
OsAffx.2602.2.S1_at--254--8234Chr12:10841048..10841072 (25 bp)
GGCAATGATCTCAAATTCTCAGGTC
NONE
OsAffx.2602.2.S1_at--496--3152Chr06:11544085..11544104 (20 bp)
AATTCTCAGGTCATTTGCGTTAACG
NONE
OsAffx.2602.2.S1_at--715--9571Chr02:7514030..7514054 (25 bp)
TCATTTGCGTTAACGTCGGCGGCGG
LOC_Os02g13860
Target Sequence 
TGCTTGATCAATGTCGGCACCGACGGCGGCAAGCGGGTGGCCGGATATGTCGAGCGAGTAGCGGCCGTAGCCGAAGACGT
TGTAGAAGGTGATGATGACGGTGGTGTAGTGGCCGGTGTCGCAGGCCTTTCTCAGGGAGCCTTCCTCCTTGTGGCGGCCC
CAGTAGACGACGAGGCCCGGGTCGTCGGCCGTCGCTGGCGGCGGCGTAGCGAGGAGCAGCTCCTGCTAAGGGGAGGAGTG
CATGCACGAGGCCCATGTGGCTTGAAGGAGAACAGCAAGATGGCAATGATCTCAAATTCTCAGGTCATTTGCGTTAACGT
CGGCGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2602.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis