Browse Element(s) Details


OsAffx.26085.1.S1_x_at

Description tigr:9632.m01973
TID=OsAffx.26085.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2147011/11hypothetical protein
LOC_Os03g518401/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21430OsAffx.3846.1.S1_at11/114+12094181..12095109expressed protein
LOC_Os04g21440OsAffx.26046.1.S1_at1/114+12099320..12100374Transposable element protein, putative, Retrotrans_gag, expressed
LOC_Os04g21450NANA4+12101955..12103602hypothetical protein
LOC_Os04g21460OsAffx.13906.1.S1_at11/114+12114377..12115331hypothetical protein
LOC_Os04g21470OsAffx.26085.1.S1_at11/114+12118172..12118648hypothetical protein
LOC_Os04g21470OsAffx.26085.1.S1_x_at11/114+12118172..12118648hypothetical protein
LOC_Os04g21480NANA4+12121568..12124390retrotransposon protein, putative, unclassified
LOC_Os04g21490OsAffx.13907.1.S1_at11/114+12124918..12125846hypothetical protein
LOC_Os04g21500NANA4+12130292..12135587retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g21510Os.52979.1.S1_at5/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510Os.55650.1.A1_at4/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510Os.46314.3.S1_at4/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510OsAffx.21756.5.A1_x_at3/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510OsAffx.22143.1.S1_at2/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510Os.7307.3.S1_x_at1/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510OsAffx.7362.1.S1_x_at1/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21510Os.22646.1.S1_x_at1/114+12138894..12144790transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26085.1.S1_x_at--168--4691Chr04:12118220..12118244 (25 bp)
GCGGAGGTTGCCTCAGACGTCGTCT
LOC_Os04g21470
OsAffx.26085.1.S1_x_at--689--8011Chr04:12118222..12118246 (25 bp)
GGAGGTTGCCTCAGACGTCGTCTTC
LOC_Os04g21470
OsAffx.26085.1.S1_x_at--847--10691Chr04:12118227..12118251 (25 bp)
TTGCCTCAGACGTCGTCTTCTTCAA
LOC_Os04g21470
OsAffx.26085.1.S1_x_at--862--3791Chr04:12118259..12118283 (25 bp)
CTCGCTGGCTTCGTTGCCGACGGGA
LOC_Os04g21470
OsAffx.26085.1.S1_x_at--567--10632Chr04:12118286..12118310 (25 bp)
TTCGAGGACGCGTTCGAGCTGGCAT
LOC_Os04g21470
OsAffx.26085.1.S1_x_at--716--4771Chr04:12118367..12118391 (25 bp)
GCTGCCTCTGGATCTCCGCGTTGTG
LOC_Os04g21470
OsAffx.26085.1.S1_x_at--860--9171Chr04:12118369..12118393 (25 bp)
TGCCTCTGGATCTCCGCGTTGTGCT
LOC_Os04g21470
OsAffx.26085.1.S1_x_at--336--8571Chr04:12118375..12118399 (25 bp)
TGGATCTCCGCGTTGTGCTCCTCCT
LOC_Os04g21470
OsAffx.26085.1.S1_x_at--377--3891Chr04:12118402..12118426 (25 bp)
CTGTCCATGGCCACCTGGAGAGAGG
LOC_Os04g21470
OsAffx.26085.1.S1_x_at--1056--10631Chr04:12118485..12118509 (25 bp)
TTCGCATTGCCTTCGGATCTCCGTG
LOC_Os04g21470
OsAffx.26085.1.S1_x_at--1020--71Chr04:12118490..12118514 (25 bp)
ATTGCCTTCGGATCTCCGTGCCTAG
LOC_Os04g21470
Target Sequence 
GCGGAGGTTGCCTCAGACGTCGTCTTCTTCAACACCCTCCTCGCTGGCTTCGTTGCCGACGGGAGGTTCGAGGACGCGTT
CGAGCTGGCATGGAAGATGGAGCAGCGTGGCTGCCCGCCCACCACCGCCACCTCGCCTAGCCTTCACGCTGCCTCTGGAT
CTCCGCGTTGTGCTCCTCCTCGCTGTCCATGGCCACCTGGAGAGAGGGGGCCGGCGAGCCTCTTCCACACCACCACCGTT
GCCACCACCGCCACCTCGCCCCGCCTTCGCATTGCCTTCGGATCTCCGTGCCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26085.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis