Browse Element(s) Details


OsAffx.26101.1.S1_at

Description tigr:9632.m02084
TID=OsAffx.26101.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2254011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22500NANA4+12717238..12719618retrotransposon protein, putative, unclassified
LOC_Os04g22510OsAffx.26099.1.S1_at11/114+12725627..12725944hypothetical protein
LOC_Os04g22510OsAffx.26099.1.S1_x_at11/114+12725627..12725944hypothetical protein
LOC_Os04g22520OsAffx.20730.1.S1_x_at1/114+12736244..12737663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g22520OsAffx.20733.1.S1_x_at1/114+12736244..12737663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g22520OsAffx.9790.1.S1_x_at1/114+12736244..12737663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g22520OsAffx.1197.1.S1_x_at1/114+12736244..12737663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g22540OsAffx.26101.1.S1_at11/114+12742096..12743205hypothetical protein
LOC_Os04g22550OsAffx.3860.1.S1_at11/114+12744349..12745621hypothetical protein
LOC_Os04g22560Os.45161.1.A1_x_at3/114+12748299..12749075hypothetical protein
LOC_Os04g22570NANA4+12749781..12757141retrotransposon protein, putative, unclassified, expressed
LOC_Os04g22580NANA4+12758415..12761591retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g22590OsAffx.22699.1.S1_x_at2/114+12763827..12767489retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26101.1.S1_at--362--9551Chr04:12743145..12743169 (25 bp)
TCTATAGGTGGCCTCCTTCGACAGG
LOC_Os04g22540
OsAffx.26101.1.S1_at--585--7631Chr04:12743121..12743145 (25 bp)
GGGAGTTCATACCTTAGAAGTCGAA
LOC_Os04g22540
OsAffx.26101.1.S1_at--1099--9031Chr04:12743039..12743063 (25 bp)
TGCAGATAGATGACTCTGACCCCGC
LOC_Os04g22540
OsAffx.26101.1.S1_at--996--3271Chr04:12743014..12743038 (25 bp)
CAAAATCATATCACTCGGCGGAGAC
LOC_Os04g22540
OsAffx.26101.1.S1_at--561--5551Chr04:12742613..12742634 (22 bp)
GAAAGCGGCGATTTTCTTTTCGTGT
LOC_Os04g22540
OsAffx.26101.1.S1_at--1075--10291Chr04:12742596..12742620 (25 bp)
TTTCGTGTTTTGCAGTGGTGGTCAA
LOC_Os04g22540
OsAffx.26101.1.S1_at--368--5511Chr04:12742560..12742584 (25 bp)
GAACAAATCTACAGCGACGTGGAAG
LOC_Os04g22540
OsAffx.26101.1.S1_at--757--2711Chr04:12742451..12742475 (25 bp)
AAGCAGGCTATACGTTCTTCGTGGA
LOC_Os04g22540
OsAffx.26101.1.S1_at--811--6731Chr04:12742438..12742462 (25 bp)
GTTCTTCGTGGAGTGCATCTATTAT
LOC_Os04g22540
OsAffx.26101.1.S1_at--930--2111Chr04:12742392..12742416 (25 bp)
ACATGGTTGTGCGACCCAACTTGAT
LOC_Os04g22540
OsAffx.26101.1.S1_at--774--5511Chr04:12742346..12742370 (25 bp)
GAAAATCTTTCTATTGCCACGAAGC
LOC_Os04g22540
Target Sequence 
TCTATAGGTGGCCTCCTTCGACAGGGGAGTTCATACCTTAGAAGTCGAACGGCAAGAAAGAACCAGGCCGACGCTGAAAC
CCGTCCCCACGGCAAGGTTGTCTGGTTGCAGATAGATGACTCTGACCCCGCCAAAATCATATCACTCGGCGGAGACCTGA
GTGAACAAGAAAGCGGCGATTTTCTTTTCGTGTTTTGCAGTGGTGGTCAAATCTACAGGAAGAACAAATCTACAGCGACG
TGGAAGGGGATGAAAGTGCTGCTGCGTCAACAACATGATTCACCAATTGAGAAGTTGGCTATTGTAGGTGAAGATTTTAA
GGCTTCCAAGAAGCAGGCTATACGTTCTTCGTGGAGTGCATCTATTATCAGAGATGAGTTACTGAATGCACATGGTTGTG
CGACCCAACTTGATGGGAAGAGGTTTATGTTTGCTGAAAATCTTTCTATTGCCACGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis