Browse Element(s) Details


OsAffx.26128.1.S1_at

Description tigr:9632.m02272
TID=OsAffx.26128.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2434011/11phytase, putative
LOC_Os04g2446011/11phytase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24300OsAffx.3879.1.S1_x_at11/114+13894936..13900029Protein kinase domain containing protein, expressed
LOC_Os04g24310OsAffx.13951.2.S1_s_at11/114+13909491..13911306hypothetical protein
LOC_Os04g24310OsAffx.13951.2.S1_at9/114+13909491..13911306hypothetical protein
LOC_Os04g24319Os.23116.1.A1_s_at11/114+13911848..1391280123 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24319OsAffx.13951.2.S1_s_at11/114+13911848..1391280123 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24319OsAffx.13951.1.S1_at10/114+13911848..1391280123 kDa jasmonate-induced protein, putative, expressed
LOC_Os04g24328Os.55859.1.S1_at1/114+13913295..1391418123 kDa jasmonate-induced protein, putative
LOC_Os04g24340OsAffx.26128.1.S1_at11/114+13924359..13925560phytase, putative
LOC_Os04g24340OsAffx.28544.2.S1_x_at1/114+13924359..13925560phytase, putative
LOC_Os04g24350NANA4+13927740..13931709retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g24360NANA4+13933066..13933691hypothetical protein
LOC_Os04g24370NANA4+13948063..13955445retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26128.1.S1_at--862--752Chr04:14003779..14003803 (25 bp)
ATGTCAAAGGCGTTCTCCATGATGC
LOC_Os04g24460
OsAffx.26128.1.S1_at--1061--4632Chr04:14003788..14003812 (25 bp)
GCGTTCTCCATGATGCTCAAGCAGG
LOC_Os04g24460
OsAffx.26128.1.S1_at--577--9712Chr04:14003819..14003843 (25 bp)
TCAAGTTCCCCGACCTTGTCAAACG
LOC_Os04g24460
OsAffx.26128.1.S1_at--1069--9372Chr04:14003977..14004001 (25 bp)
TCGAGGGCGAGTTCGAGCATCTGAC
LOC_Os04g24460
OsAffx.26128.1.S1_at--961--4972Chr04:14003993..14004017 (25 bp)
GCATCTGACGGACGCGCAGAAGCTA
LOC_Os04g24460
OsAffx.26128.1.S1_at--14--6152Chr04:14004018..14004042 (25 bp)
GAGGTGTACAACAGCATCATCGAGG
LOC_Os04g24460
OsAffx.26128.1.S1_at--1007--9612Chr04:14004124..14004148 (25 bp)
TCATGGTGTGGGACATCTTCACGGC
LOC_Os04g24460
OsAffx.26128.1.S1_at--545--8352Chr04:14004164..14004188 (25 bp)
GGCGGTGCTCCGCAACAGCCTGAAC
LOC_Os04g24460
OsAffx.26128.1.S1_at--175--5912Chr04:14004264..14004288 (25 bp)
GAGCTCGGCGTCTTTGTCGTGTCGA
LOC_Os04g24460
OsAffx.26128.1.S1_at--215--9132Chr04:14004346..14004370 (25 bp)
TGCTGGTGGACCTCATCATGGGAAC
LOC_Os04g24460
OsAffx.26128.1.S1_at--157--332Chr04:14004412..14004436 (25 bp)
ATACTGCCACCATGCCCGATGGCAT
LOC_Os04g24460
Target Sequence 
ATGTCAAAGGCGTTCTCCATGATGCTCAAGCAGGAGGGCATCAAGTTCCCCGACCTTGTCAAACGACACAAGAACAAGTT
GGGATTCGAGGGCGAGTTCGAGCATCTGACGGACGCGCAGAAGCTAGAGGTGTACAACAGCATCATCGAGGAGTCCGGCA
GGGCCAAGATGCCNGTGANGGAGATGGTCTCGACGGCGGCGGGGGTGGCGGTGCTCCTGGCGACGGCGGGCCTCATGGTG
TGGGACATCTTCACGGCGGAGCACACCGTCGAGGCGGTGCTCCGCAACAGCCTGAACGCGCTGGCGGAGGTGGGCGCCTT
CGCGGTGCAGGTGGTGGTGGAGGGCGCGGTGACGGAGGCGGTCGCGGACCTCGAGCTCGGCGTCTTTGTCGTGTCGATGG
CCGGGNTCGTCGCCGGCGCCGTNGCCGGCCTCCTGTTCGTCGCCGTCGCCGGCGTGCTGGTGGACCTCATCATGGGAACC
GGGGGCAATGTGGCGCCTCCGGTGACTGATCTCAAGTTCCATACTGCCACCATGCCCGATGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis