Browse Element(s) Details


OsAffx.26173.2.S1_at

Description tigr:9632.m02529
TID=OsAffx.26173.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to in2-2 protein. (maize
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2689011/11IN2-2 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26870Os.11469.1.S1_at11/114+15701417..15706514Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26880NANA4+15709146..15716294transposon protein, putative, Mutator sub-class
LOC_Os04g26890OsAffx.26173.2.S1_at11/114+15717258..15718025IN2-2 protein, putative, expressed
LOC_Os04g26900OsAffx.3912.1.S1_at11/114+15719920..15724161hypothetical protein
LOC_Os04g26910Os.37724.1.S1_at11/114+15728220..15731517Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26910Os.25795.1.S1_s_at11/114+15728220..15731517Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26920OsAffx.26173.1.S1_s_at11/114+15736995..15740760IN2-2 protein, putative, expressed
LOC_Os04g26920Os.11837.1.S1_at11/114+15736995..15740760IN2-2 protein, putative, expressed
LOC_Os04g26920OsAffx.26173.1.S1_at10/114+15736995..15740760IN2-2 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0003700molecular_functiontranscription factor activity
GO:0004033molecular_functionaldo-keto reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26173.2.S1_at--84--10651Chr04:15717363..15717387 (25 bp)
TTCCACGGGCCGTCCAAGCCGGAGG
LOC_Os04g26890
OsAffx.26173.2.S1_at--144--9451Chr04:15717484..15717644 (25 bp)
TCGGCAAGGCGCTACAGGTCGGCAG
LOC_Os04g26890
OsAffx.26173.2.S1_at--791--9871Chr04:15717632..15717656 (25 bp)
TACAGGTCGGCAGTGTGCGCGACAA
LOC_Os04g26890
OsAffx.26173.2.S1_at--25--5031Chr04:15717641..15717665 (25 bp)
GCAGTGTGCGCGACAATGTTGCACT
LOC_Os04g26890
OsAffx.26173.2.S1_at--943--9151Chr04:15717647..15717671 (25 bp)
TGCGCGACAATGTTGCACTGGCCAC
LOC_Os04g26890
OsAffx.26173.2.S1_at--340--4111Chr04:15717651..15717675 (25 bp)
CGACAATGTTGCACTGGCCACCAAG
LOC_Os04g26890
OsAffx.26173.2.S1_at--266--4391Chr04:15717667..15717691 (25 bp)
GCCACCAAGTTCGGTAAATTTCTCG
LOC_Os04g26890
OsAffx.26173.2.S1_at--362--9731Chr04:15717681..15717705 (25 bp)
TAAATTTCTCGCCGACGGTAAGGTG
LOC_Os04g26890
OsAffx.26173.2.S1_at--314--4551Chr04:15717816..15717935 (25 bp)
GCCCATCGAGGTCACTAAACATAAA
LOC_Os04g26890
OsAffx.26173.2.S1_at--797--9351Chr04:15717821..15717940 (25 bp)
TCGAGGTCACTAAACATAAACGGGT
LOC_Os04g26890
OsAffx.26173.2.S1_at--620--2371Chr04:15717933..15717957 (25 bp)
AAACGGGTGAGTGATGAAAAGCTGA
LOC_Os04g26890
Target Sequence 
TTCCACGGGCCGTCCAAGCCGGAGGCCGACATGGTGGCGCTCATCCACCACGCCGTCGCCGCCGGCGTCACCCTCCTCGA
CACCGCCGACATCTACGGGCCGCACGCCAACGAGGCCCTCCTCGGCAAGGCGCTACAGGTCGGCAGTGTGCGCGACAATG
TTGCACTGGCCACCAAGTTCGGTAAATTTCTCGCCGACGGTAAGGTGGGGATCCGCGGGGACCCGGCGTACGTGCGGGCG
GCGTGCGAGGGCAGCCTCCAGCGGCTCGGCGTCGACTGCATAGACCTTTACTACCAGCACCGCGTCGACAAGAAGGTGCC
CATCGAGGTCACTAAACATAAACGGGTGAGTGATGAAAAGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26173.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis