Browse Element(s) Details


OsAffx.26177.1.S1_at

Description tigr:9632.m02541
TID=OsAffx.26177.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2701011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26980OsAffx.13989.1.S1_at11/114+15766318..15770313Terpene synthase family, metal binding domain containing protein
LOC_Os04g26994NANA4+15781431..15781735hypothetical protein
LOC_Os04g27010OsAffx.26177.1.S1_at11/114+15795311..15795658hypothetical protein
LOC_Os04g27020OsAffx.13991.1.S1_at11/114+15799098..15802139Cytochrome P450 family protein
LOC_Os04g27034NANA4+15807332..15810057hypothetical protein
LOC_Os04g27050OsAffx.26178.1.S1_at10/114+15812040..15812583hypothetical protein
LOC_Os04g27060Os.11266.1.S1_at11/114+15814091..15817930Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g27070OsAffx.3914.1.S1_at10/114+15819887..15824535Terpene synthase family, metal binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26177.1.S1_at--278--9491Chr04:15795564..15795588 (25 bp)
TCTCCACCAGTGTAGCGGTAGCCAA
LOC_Os04g27010
OsAffx.26177.1.S1_at--772--3291Chr04:15795512..15795536 (25 bp)
CACAACAGCAACAGCCGAGGCAGAT
LOC_Os04g27010
OsAffx.26177.1.S1_at--296--2491Chr04:15795503..15795527 (25 bp)
AACAGCCGAGGCAGATGCAAGCGAT
LOC_Os04g27010
OsAffx.26177.1.S1_at--1018--6231Chr04:15795472..15795496 (25 bp)
GATGGAAGAAGCTACGGCGAACAAG
LOC_Os04g27010
OsAffx.26177.1.S1_at--363--5511Chr04:15795454..15795478 (25 bp)
GAACAAGGAGTAGCCGAGATAGACA
LOC_Os04g27010
OsAffx.26177.1.S1_at--583--291Chr04:15795436..15795460 (25 bp)
ATAGACAAGGGCAATGAGTGTGGTC
LOC_Os04g27010
OsAffx.26177.1.S1_at--83--1931Chr04:15795400..15795424 (25 bp)
ACGGTCGTGGGCAAGGCAGACACAA
LOC_Os04g27010
OsAffx.26177.1.S1_at--206--8271Chr04:15795386..15795410 (25 bp)
GGCAGACACAAGTGATCGCACCAGC
LOC_Os04g27010
OsAffx.26177.1.S1_at--1132--5071Chr04:15795369..15795393 (25 bp)
GCACCAGCCGCGTGAACGAGCATGA
LOC_Os04g27010
OsAffx.26177.1.S1_at--571--1871Chr04:15795354..15795378 (25 bp)
ACGAGCATGAGGGAAAAGGTCTGAC
LOC_Os04g27010
OsAffx.26177.1.S1_at--878--2431Chr04:15795341..15795365 (25 bp)
AAAAGGTCTGACATATGTAGGTGAC
LOC_Os04g27010
Target Sequence 
TCTCCACCAGTGTAGCGGTAGCCAAGGTGGACGAGGTAGACAGGGCGAGGCGCACAACAGCAACAGCCGAGGCAGATGCA
AGCGATGGTGATGATGGAAGAAGCTACGGCGAACAAGGAGTAGCCGAGATAGACAAGGGCAATGAGTGTGGTCGCAGGCG
GATAACGGTCGTGGGCAAGGCAGACACAAGTGATCGCACCAGCCGCGTGAACGAGCATGAGGGAAAAGGTCTGACATATG
TAGGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis