Browse Element(s) Details


OsAffx.26224.1.S1_s_at

Description tigr:9632.m02750
TID=OsAffx.26224.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=plant-specific FAD-dependent oxidoreductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2909011/11plant-specific FAD-dependent oxidoreductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29080NANA4+17049488..17049991hypothetical protein
LOC_Os04g29090OsAffx.26224.1.S1_s_at11/114+17071286..17075741plant-specific FAD-dependent oxidoreductase family protein, expressed
LOC_Os04g29090OsAffx.26224.2.S1_x_at5/114+17071286..17075741plant-specific FAD-dependent oxidoreductase family protein, expressed
LOC_Os04g29100Os.38751.1.A1_at2/114+17081649..17085028hypothetical protein
LOC_Os04g29100OsAffx.8469.1.S1_x_at1/114+17081649..17085028hypothetical protein
LOC_Os04g29100OsAffx.30338.2.S1_x_at1/114+17081649..17085028hypothetical protein
LOC_Os04g29110OsAffx.26223.1.S1_at11/114+17088606..17089410hypothetical protein
LOC_Os04g29120OsAffx.3940.1.S1_x_at11/114+17092602..17094370hypothetical protein
LOC_Os04g29120OsAffx.3940.1.S1_at11/114+17092602..17094370hypothetical protein
LOC_Os04g29120OsAffx.5752.1.S1_x_at1/114+17092602..17094370hypothetical protein
LOC_Os04g29130NANA4+17095439..17095879retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g29140OsAffx.20387.1.S1_x_at1/114+17096369..17098044transposon protein, putative, unclassified
LOC_Os04g29150NANA4+17098608..17098976retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26224.1.S1_s_at--620--10511Chr04:17071543..17071567 (25 bp)
TTCACCGAGGCGAGGGTCTGCTCGT
LOC_Os04g29090
OsAffx.26224.1.S1_s_at--451--7171Chr04:17071528..17071552 (25 bp)
GTCTGCTCGTTGTTGCGAGACGCTG
LOC_Os04g29090
OsAffx.26224.1.S1_s_at--702--6671Chr04:17071517..17071541 (25 bp)
GTTGCGAGACGCTGCCGATGGCTAC
LOC_Os04g29090
OsAffx.26224.1.S1_s_at--799--6231Chr04:17071501..17071525 (25 bp)
GATGGCTACCTTCGCGATCGTCATG
LOC_Os04g29090
OsAffx.26224.1.S1_s_at--804--6391Chr04:17071486..17071510 (25 bp)
GATCGTCATGGCAATGTCAGGGTTA
LOC_Os04g29090
OsAffx.26224.1.S1_s_at--660--751Chr04:17071473..17071497 (25 bp)
ATGTCAGGGTTAATGCAACTAGTAC
LOC_Os04g29090
OsAffx.26224.1.S1_s_at--504--7611Chr04:17071447..17071471 (25 bp)
GGGAAGCATTCACTATTGCACGAAT
LOC_Os04g29090
OsAffx.26224.1.S1_s_at--46--2051Chr04:17071436..17071460 (25 bp)
ACTATTGCACGAATGATTTTCCTAA
LOC_Os04g29090
OsAffx.26224.1.S1_s_at--27--10871Chr04:17071399..17071423 (25 bp)
TTGGACACGGATTATAACTGGTCGT
LOC_Os04g29090
OsAffx.26224.1.S1_s_at--205--2551Chr04:17071384..17071408 (25 bp)
AACTGGTCGTGTCTGTAAAAATTGA
LOC_Os04g29090
OsAffx.26224.1.S1_s_at--2--2251Chr04:17071366..17071390 (25 bp)
AAATTGACTCGCACCATATATGAAA
LOC_Os04g29090
Target Sequence 
TTCACCGAGGCGAGGGTCTGCTCGTTGTTGCGAGACGCTGCCGATGGCTACCTTCGCGATCGTCATGGCAATGTCAGGGT
TAATGCAACTAGTACAGGGAAGCATTCACTATTGCACGAATGATTTTCCTAAAAAAACAATAGGTTGGACACGGATTATA
ACTGGTCGTGTCTGTAAAAATTGACTCGCACCATATATGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26224.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis