Browse Element(s) Details


OsAffx.26224.2.S1_x_at

Description tigr:9632.m02762
TID=OsAffx.26224.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=plant-specific FAD-dependent oxidoreductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2921011/11plant-specific FAD-dependent oxidoreductase family protein
LOC_Os04g290905/11plant-specific FAD-dependent oxidoreductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29180NANA4+17109810..17111876retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g29190Os.38751.1.A1_at3/114+17114505..17121751retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g29190OsAffx.8469.1.S1_x_at1/114+17114505..17121751retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g29190OsAffx.8847.1.S1_x_at1/114+17114505..17121751retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g29190OsAffx.27810.1.S1_x_at1/114+17114505..17121751retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g29190OsAffx.8338.1.S1_x_at1/114+17114505..17121751retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g29200NANA4+17124049..17126547hypothetical protein
LOC_Os04g29210OsAffx.26224.2.S1_x_at11/114+17131805..17133641plant-specific FAD-dependent oxidoreductase family protein
LOC_Os04g29210OsAffx.26224.2.S1_at9/114+17131805..17133641plant-specific FAD-dependent oxidoreductase family protein
LOC_Os04g29224OsAffx.25936.1.S1_s_at6/114+17141217..17148426transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29224OsAffx.25936.7.S1_s_at5/114+17141217..17148426transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29224OsAffx.13723.1.S1_at1/114+17141217..17148426transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29224OsAffx.25936.2.S1_x_at1/114+17141217..17148426transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29240NANA4+17151958..17152251transposon protein, putative, unclassified
LOC_Os04g29250Os.55711.1.S1_at3/114+17156339..17157967retrotransposon protein, putative, unclassified
LOC_Os04g29260OsAffx.3942.1.S1_at10/114+17158312..17159397hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26224.2.S1_x_at--512--2612Chr04:17133081..17133105 (25 bp)
AACCCGGCGGCGTTCTGCCAGATCG
LOC_Os04g29210
OsAffx.26224.2.S1_x_at--93--6731Chr04:17133092..17133116 (25 bp)
GTTCTGCCAGATCGACTCCAAGATG
LOC_Os04g29210
OsAffx.26224.2.S1_x_at--994--9351Chr04:17133103..17133127 (25 bp)
TCGACTCCAAGATGGGCCTGCTGAT
LOC_Os04g29210
OsAffx.26224.2.S1_x_at--187--3231Chr04:17133110..17133134 (25 bp)
CAAGATGGGCCTGCTGATGCGCTAC
LOC_Os04g29210
OsAffx.26224.2.S1_x_at--1141--8852Chr04:17133124..17133148 (25 bp)
TGATGCGCTACGTCGCGGCGTCGTC
LOC_Os04g29210
OsAffx.26224.2.S1_x_at--824--4012Chr04:17133142..17133166 (25 bp)
CGTCGTCGGCGTACCTCGGCAAGGC
LOC_Os04g29210
OsAffx.26224.2.S1_x_at--252--4032Chr04:17133151..17133175 (25 bp)
CGTACCTCGGCAAGGCGGAGGACTC
LOC_Os04g29210
OsAffx.26224.2.S1_x_at--386--4692Chr04:17133165..17133189 (25 bp)
GCGGAGGACTCGGTGGACTTCGACG
LOC_Os04g29210
OsAffx.26224.2.S1_x_at--364--1831Chr04:17133232..17133256 (25 bp)
ACGCCGACGTGTTCGACGAGGTCGA
LOC_Os04g29210
OsAffx.26224.2.S1_x_at--71--5151Chr04:17133298..17133322 (25 bp)
GCAAGAACCGCAACTACGCCTTCGA
LOC_Os04g29210
OsAffx.26224.2.S1_x_at--1007--4371Chr04:17133343..17133367 (25 bp)
CCAACGCCGGCAAGTTCATGAGGGT
LOC_Os04g29210
Target Sequence 
AACCCGGCGGCGTTCTGCCAGATCGACTCCAAGATGGGCCTGCTGATGCGCTACGTCGCGGCGTCGTCGGCGTACCTCGG
CAAGGCGGAGGACTCGGTGGACTTCGACGTCACCTACTACCGGAGCTACGCCCGCGGCGCGCCGCGCGCGCACGCCGACG
TGTTCGACGAGGTCGAGCAGATGGCGCTGCGCAAGCACGGCGGCGTGCCGCACTGGGGCAAGAACCGCAACTACGCCTTC
GACGGCGCCATCGCCAGGTACCCCAACGCCGGCAAGTTCATGAGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26224.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis