Browse Element(s) Details


OsAffx.3942.1.S1_at

Description tigr:9632.m02767
TID=OsAffx.3942.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2926010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29210OsAffx.26224.2.S1_x_at11/114+17131805..17133641plant-specific FAD-dependent oxidoreductase family protein
LOC_Os04g29210OsAffx.26224.2.S1_at9/114+17131805..17133641plant-specific FAD-dependent oxidoreductase family protein
LOC_Os04g29224OsAffx.25936.1.S1_s_at6/114+17141217..17148426transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29224OsAffx.25936.7.S1_s_at5/114+17141217..17148426transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29224OsAffx.13723.1.S1_at1/114+17141217..17148426transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29224OsAffx.25936.2.S1_x_at1/114+17141217..17148426transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29240NANA4+17151958..17152251transposon protein, putative, unclassified
LOC_Os04g29250Os.55711.1.S1_at3/114+17156339..17157967retrotransposon protein, putative, unclassified
LOC_Os04g29260OsAffx.3942.1.S1_at10/114+17158312..17159397hypothetical protein
LOC_Os04g29270OsAffx.25007.2.S1_s_at8/114+17160605..17167528retrotransposon protein, putative, unclassified
LOC_Os04g29270OsAffx.25007.2.S1_at7/114+17160605..17167528retrotransposon protein, putative, unclassified
LOC_Os04g29270OsAffx.25007.1.S1_at4/114+17160605..17167528retrotransposon protein, putative, unclassified
LOC_Os04g29280OsAffx.26225.1.S1_at11/114+17176934..17177342hypothetical protein
LOC_Os04g29280OsAffx.26225.1.S1_x_at11/114+17176934..17177342hypothetical protein
LOC_Os04g29290NANA4+17178425..17180699retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3942.1.S1_at--957--7531Chr04:17158371..17158395 (25 bp)
GTGGCTCCGGTCGATGCCGTTAGAT
LOC_Os04g29260
OsAffx.3942.1.S1_at--712--8311Chr04:17158373..17158397 (25 bp)
GGCTCCGGTCGATGCCGTTAGATGT
LOC_Os04g29260
OsAffx.3942.1.S1_at--836--4791Chr04:17158374..17158398 (25 bp)
GCTCCGGTCGATGCCGTTAGATGTG
LOC_Os04g29260
OsAffx.3942.1.S1_at--1081--4251Chr04:17158377..17158401 (25 bp)
CCGGTCGATGCCGTTAGATGTGGAC
LOC_Os04g29260
OsAffx.3942.1.S1_at--1136--7791Chr04:17158379..17158403 (25 bp)
GGTCGATGCCGTTAGATGTGGACAT
LOC_Os04g29260
OsAffx.3942.1.S1_at--463--7211Chr04:17158380..17158404 (25 bp)
GTCGATGCCGTTAGATGTGGACATC
LOC_Os04g29260
OsAffx.3942.1.S1_at--645--4051Chr04:17158382..17158406 (25 bp)
CGATGCCGTTAGATGTGGACATCAA
LOC_Os04g29260
OsAffx.3942.1.S1_at--396--10011Chr04:17158391..17158415 (25 bp)
TAGATGTGGACATCAAGGTGCCGGC
LOC_Os04g29260
OsAffx.3942.1.S1_at--969--6251Chr04:17158393..17158417 (25 bp)
GATGTGGACATCAAGGTGCCGGCCG
LOC_Os04g29260
OsAffx.3942.1.S1_at--269--7531Chr04:17158396..17158420 (25 bp)
GTGGACATCAAGGTGCCGGCCGGTG
LOC_Os04g29260
OsAffx.3942.1.S1_at--685--7771NONE
GGTGCCGGCCGGTGACTTGAGGTTA
NONE
Target Sequence 
GTGGCTCCGGTCGATGCCGTTAGATGTGGACATCAAGGTGCCGGCCGGTGACTTGAGGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis