Browse Element(s) Details


OsAffx.26225.1.S1_x_at

Description tigr:9632.m02769
TID=OsAffx.26225.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2928011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29240NANA4+17151958..17152251transposon protein, putative, unclassified
LOC_Os04g29250Os.55711.1.S1_at3/114+17156339..17157967retrotransposon protein, putative, unclassified
LOC_Os04g29260OsAffx.3942.1.S1_at10/114+17158312..17159397hypothetical protein
LOC_Os04g29270OsAffx.25007.2.S1_s_at8/114+17160605..17167528retrotransposon protein, putative, unclassified
LOC_Os04g29270OsAffx.25007.2.S1_at7/114+17160605..17167528retrotransposon protein, putative, unclassified
LOC_Os04g29270OsAffx.25007.1.S1_at4/114+17160605..17167528retrotransposon protein, putative, unclassified
LOC_Os04g29280OsAffx.26225.1.S1_at11/114+17176934..17177342hypothetical protein
LOC_Os04g29280OsAffx.26225.1.S1_x_at11/114+17176934..17177342hypothetical protein
LOC_Os04g29290NANA4+17178425..17180699retrotransposon protein, putative, unclassified
LOC_Os04g29300OsAffx.26226.3.S1_s_at11/114+17185520..17187443hypothetical protein
LOC_Os04g29300OsAffx.26226.3.S1_at5/114+17185520..17187443hypothetical protein
LOC_Os04g29300Os.33800.1.S1_at5/114+17185520..17187443hypothetical protein
LOC_Os04g29310OsAffx.26226.2.S1_at11/114+17188081..17195882hypothetical protein
LOC_Os04g29310OsAffx.26226.1.S1_at6/114+17188081..17195882hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26225.1.S1_x_at--452--3391Chr04:17176965..17177095 (25 bp)
CAGCGACGATCATGGGTGCCGACGA
LOC_Os04g29280
OsAffx.26225.1.S1_x_at--97--1891Chr04:17176970..17177100 (25 bp)
ACGATCATGGGTGCCGACGACACCA
LOC_Os04g29280
OsAffx.26225.1.S1_x_at--236--2171Chr04:17177095..17177119 (25 bp)
ACACCAAGCCGCGTGAGGGTGGATC
LOC_Os04g29280
OsAffx.26225.1.S1_x_at--507--6211Chr04:17177116..17177140 (25 bp)
GATCCGGCCACCCTAGCTTCGGGAG
LOC_Os04g29280
OsAffx.26225.1.S1_x_at--126--5891Chr04:17177138..17177162 (25 bp)
GAGCGGTGGATCTGCCTACGCCAGC
LOC_Os04g29280
OsAffx.26225.1.S1_x_at--798--4291Chr04:17177152..17177176 (25 bp)
CCTACGCCAGCCTCGGGAGCAGTGG
LOC_Os04g29280
OsAffx.26225.1.S1_x_at--886--4611Chr04:17177184..17177208 (25 bp)
GCGATGGCGGCAACACCGGCTAGGG
LOC_Os04g29280
OsAffx.26225.1.S1_x_at--41--7371Chr04:17177208..17177232 (25 bp)
GTGAAAGAGACGACAGTGGCAACCC
LOC_Os04g29280
OsAffx.26225.1.S1_x_at--663--3471Chr04:17177256..17177280 (25 bp)
CAGGCCAAAGAGGTGGATCTATCAC
LOC_Os04g29280
OsAffx.26225.1.S1_x_at--1083--3331Chr04:17177282..17177306 (25 bp)
CACGGCCCCAGTAGAGGTGCTGTTT
LOC_Os04g29280
OsAffx.26225.1.S1_x_at--421--4211Chr04:17177287..17177311 (25 bp)
CCCCAGTAGAGGTGCTGTTTGCGGC
LOC_Os04g29280
Target Sequence 
CAGCGACGATCATGGGTGCCGACGACACCAAGCCGCGTGAGGGTGGATCCGGCCACCCTAGCTTCGGGAGCGGTGGATCT
GCCTACGCCAGCCTCGGGAGCAGTGGTGCCTCGGCGATGGCGGCAACACCGGCTAGGGTGAAAGAGACGACAGTGGCAAC
CCGCGCGACGGCGGAAACGTTGCCCCAGGCCAAAGAGGTGGATCTATCACCCACGGCCCCAGTAGAGGTGCTGTTTGCGG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26225.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis