Browse Element(s) Details


OsAffx.26226.3.S1_s_at

Description tigr:9632.m02771
TID=OsAffx.26226.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2930011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29270OsAffx.25007.2.S1_s_at8/114+17160605..17167528retrotransposon protein, putative, unclassified
LOC_Os04g29270OsAffx.25007.2.S1_at7/114+17160605..17167528retrotransposon protein, putative, unclassified
LOC_Os04g29270OsAffx.25007.1.S1_at4/114+17160605..17167528retrotransposon protein, putative, unclassified
LOC_Os04g29280OsAffx.26225.1.S1_at11/114+17176934..17177342hypothetical protein
LOC_Os04g29280OsAffx.26225.1.S1_x_at11/114+17176934..17177342hypothetical protein
LOC_Os04g29290NANA4+17178425..17180699retrotransposon protein, putative, unclassified
LOC_Os04g29300OsAffx.26226.3.S1_s_at11/114+17185520..17187443hypothetical protein
LOC_Os04g29300OsAffx.26226.3.S1_at5/114+17185520..17187443hypothetical protein
LOC_Os04g29300Os.33800.1.S1_at5/114+17185520..17187443hypothetical protein
LOC_Os04g29310OsAffx.26226.2.S1_at11/114+17188081..17195882hypothetical protein
LOC_Os04g29310OsAffx.26226.1.S1_at6/114+17188081..17195882hypothetical protein
LOC_Os04g29320Os.27435.1.S1_x_at4/114+17210692..17215150transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29320OsAffx.22421.2.S1_at3/114+17210692..17215150transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29320Os.46334.1.S1_x_at1/114+17210692..17215150transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29320Os.46334.1.S1_at1/114+17210692..17215150transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26226.3.S1_s_at--665--4832Chr04:17186333..17186357 (25 bp)
GCTACCTCAAAACACCTGTCTTGGG
LOC_Os04g29300
OsAffx.26226.3.S1_s_at--352--2532Chr04:17186385..17186409 (25 bp)
AACTACCGAAGAGCCACTAGCAAGT
LOC_Os04g29300
OsAffx.26226.3.S1_s_at--101--1732Chr04:17186445..17186469 (25 bp)
ACCAGCTATAGCACCTCAGCCTAAT
LOC_Os04g29300
OsAffx.26226.3.S1_s_at--397--1692Chr04:17186462..17186486 (25 bp)
AGCCTAATGTTCCTATCGTGAGCAG
LOC_Os04g29300
OsAffx.26226.3.S1_s_at--473--2312Chr04:17186563..17186587 (25 bp)
AAAGGACGTTGCTCGATGTGCCATC
LOC_Os04g29300
OsAffx.26226.3.S1_s_at--413--772Chr04:17186578..17186602 (25 bp)
ATGTGCCATCTAAGGTGGCCTCTGT
LOC_Os04g29300
OsAffx.26226.3.S1_s_at--766--5512Chr04:17186640..17186664 (25 bp)
GAAAATCCTTCTTTTGTTCGTGGCG
LOC_Os04g29300
OsAffx.26226.3.S1_s_at--54--3092Chr04:17187192..17187216 (25 bp)
AATACAGGTTCAGCGCCTTGTGTTT
LOC_Os04g29300
OsAffx.26226.3.S1_s_at--822--272Chr04:17187246..17187270 (25 bp)
ATAGGAAGCTTGCTTCCTCGCCGTG
LOC_Os04g29300
OsAffx.26226.3.S1_s_at--305--6292Chr04:17187360..17187384 (25 bp)
GATGATAGTGGTCCTGACAAAGACA
LOC_Os04g29300
OsAffx.26226.3.S1_s_at--340--1272Chr04:17187389..17187413 (25 bp)
AGATAACCTAGGTGCAATGCTTGAT
LOC_Os04g29300
Target Sequence 
GCTACCTCAAAACACCTGTCTTGGGTGTTCCTGAGCAGCCTTCTGCTGCTCAAACTACCGAAGAGCCACTAGCAAGTGGT
ACAGAGAGTGTTATTGGGGTTGAACAGTCCACACCAGCTATAGCACCTCAGCCTAATGTTCCTATCGTGAGCAGAAAAAG
GACGTTGCTCGATGTGCCATCTAAGGTGGCCTCTGTTAATAGGGAGAGACGCCACGTCAAGAGAACGGCCGGCGAAAATC
CTTCTTTTGTTCGTGGCGTACTTAACGGAGCTGATGTCGACAAATCGATAAATACAGGTTCAGCGCCTTGTGTTTTCAAG
ATAAATGGGGTTGTCCACCACCATATAGGAAGCTTGCTTCCTCGCCGTGGGGCTCCACCGAAATTTGCGCAGCTATATAT
ATACGACACTGATAATGAAACAAAGAATAGGCTTAATATGTTTGAGAGAGAACGATCAGATGATAGTGGTCCTGACAAAG
ACATTATAGATAACCTAGGTGCAATGCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26226.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis