Browse Element(s) Details


OsAffx.26223.1.S1_at

Description tigr:9632.m02752
TID=OsAffx.26223.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2911011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29090OsAffx.26224.1.S1_s_at11/114+17071286..17075741plant-specific FAD-dependent oxidoreductase family protein, expressed
LOC_Os04g29090OsAffx.26224.2.S1_x_at5/114+17071286..17075741plant-specific FAD-dependent oxidoreductase family protein, expressed
LOC_Os04g29100Os.38751.1.A1_at2/114+17081649..17085028hypothetical protein
LOC_Os04g29100OsAffx.8469.1.S1_x_at1/114+17081649..17085028hypothetical protein
LOC_Os04g29100OsAffx.30338.2.S1_x_at1/114+17081649..17085028hypothetical protein
LOC_Os04g29110OsAffx.26223.1.S1_at11/114+17088606..17089410hypothetical protein
LOC_Os04g29120OsAffx.3940.1.S1_x_at11/114+17092602..17094370hypothetical protein
LOC_Os04g29120OsAffx.3940.1.S1_at11/114+17092602..17094370hypothetical protein
LOC_Os04g29120OsAffx.5752.1.S1_x_at1/114+17092602..17094370hypothetical protein
LOC_Os04g29130NANA4+17095439..17095879retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g29140OsAffx.20387.1.S1_x_at1/114+17096369..17098044transposon protein, putative, unclassified
LOC_Os04g29150NANA4+17098608..17098976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g29160NANA4+17101764..17104439retrotransposon protein, putative, unclassified
LOC_Os04g29170Os.47983.1.A1_at1/114+17105979..17106675retrotransposon protein, putative, unclassified
LOC_Os04g29180NANA4+17109810..17111876retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26223.1.S1_at--724--2871Chr04:17089212..17089235 (24 bp)
AAGGTGGCGATAGAGACGACGAAAG
LOC_Os04g29110
OsAffx.26223.1.S1_at--673--7791Chr04:17089248..17089272 (25 bp)
GGTCCGAGAGAACAACACAGTTGCA
LOC_Os04g29110
OsAffx.26223.1.S1_at--999--4332Chr04:17089276..17089300 (25 bp)
CCATGTCGATGCAGTGGCGAAGAGT
LOC_Os04g29110
OsAffx.26223.1.S1_at--820--8711Chr04:17089279..17089303 (25 bp)
TGTCGATGCAGTGGCGAAGAGTCCA
LOC_Os04g29110
OsAffx.26223.1.S1_at--1126--631Chr04:17089284..17089308 (25 bp)
ATGCAGTGGCGAAGAGTCCACCTGT
LOC_Os04g29110
OsAffx.26223.1.S1_at--262--3471Chr04:17089287..17089311 (25 bp)
CAGTGGCGAAGAGTCCACCTGTGAT
LOC_Os04g29110
OsAffx.26223.1.S1_at--594--8471Chr04:17089290..17089314 (25 bp)
TGGCGAAGAGTCCACCTGTGATGAA
LOC_Os04g29110
OsAffx.26223.1.S1_at--1010--5351Chr04:17089294..17089318 (25 bp)
GAAGAGTCCACCTGTGATGAAGCTA
LOC_Os04g29110
OsAffx.26223.1.S1_at--60--1151Chr04:17089298..17089322 (25 bp)
AGTCCACCTGTGATGAAGCTATGTT
LOC_Os04g29110
OsAffx.26223.1.S1_at--823--7271Chr04:17089299..17089323 (25 bp)
GTCCACCTGTGATGAAGCTATGTTG
LOC_Os04g29110
OsAffx.26223.1.S1_at--152--4371Chr04:17089301..17089325 (25 bp)
CCACCTGTGATGAAGCTATGTTGAG
LOC_Os04g29110
Target Sequence 
AAGGTGGCGATAGAGACGACGAAAGTGGCAAAGCTGCGGTCCGAGAGAACAACACAGTTGCAGCTCCATGTCGATGCAGT
GGCGAAGAGTCCACCTGTGATGAAGCTATGTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26223.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis