Browse Element(s) Details


OsAffx.26230.2.S1_x_at

Description tigr:9630.m04064
TID=OsAffx.26230.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4245011/11Ripening-related protein, putative, expressed
LOC_Os04g295501/11Ripening-related protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42412Os.51832.1.S1_at11/112+25508640..25509778expressed protein
LOC_Os02g42420NANA2+25512463..25516385retrotransposon protein, putative, unclassified
LOC_Os02g42430NANA2+25517597..25518511GRAM domain containing protein
LOC_Os02g42440Os.8962.1.S1_at11/112+25521815..25523187GRAM domain-containing protein, putative, expressed
LOC_Os02g42450OsAffx.26230.2.S1_at11/112+25533613..25534355Ripening-related protein, putative, expressed
LOC_Os02g42450OsAffx.26230.2.S1_x_at11/112+25533613..25534355Ripening-related protein, putative, expressed
LOC_Os02g42460OsAffx.2942.1.S1_at8/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.27681.1.S1_at3/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.27681.1.S1_x_at2/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.28736.2.S1_at1/112+25537499..25541540hypothetical protein
LOC_Os02g42470NANA2+25544704..25544949expressed protein
LOC_Os02g42479OsAffx.24689.1.S1_at10/112+25551670..25552531hypothetical protein
LOC_Os02g42488OsAffx.24690.1.S1_at11/112+25553858..25554435hypothetical protein
LOC_Os02g42497OsAffx.24689.1.S1_at11/112+25555953..25556814hypothetical protein
LOC_Os02g42506OsAffx.24690.1.S1_at11/112+25558141..25558718hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26230.2.S1_x_at--229--1531Chr02:25533757..25533781 (25 bp)
AGCAGGAGCCACTCGTGCCAGGACT
LOC_Os02g42450
OsAffx.26230.2.S1_x_at--296--8091Chr02:25533761..25533785 (25 bp)
GGAGCCACTCGTGCCAGGACTGCTG
LOC_Os02g42450
OsAffx.26230.2.S1_x_at--1059--7771Chr02:25533797..25533821 (25 bp)
GGTCCTACCCGACGTACGCTTGCTC
LOC_Os02g42450
OsAffx.26230.2.S1_x_at--1141--7732Chr04:17373502..17373525 (24 bp)
GGTGATGACGCTGAACGACTTCGAA
LOC_Os04g29550
OsAffx.26230.2.S1_x_at--670--6111Chr02:25533901..25533925 (25 bp)
GAGTGCGACGGCAAGTTCCACAAGA
LOC_Os02g42450
OsAffx.26230.2.S1_x_at--1090--7291Chr02:25533903..25533927 (25 bp)
GTGCGACGGCAAGTTCCACAAGAAC
LOC_Os02g42450
OsAffx.26230.2.S1_x_at--210--6691Chr02:25533915..25533939 (25 bp)
GTTCCACAAGAACACGGAGCGCGTG
LOC_Os02g42450
OsAffx.26230.2.S1_x_at--838--8391Chr02:25533974..25533998 (25 bp)
GGCGCTGCAACAAGAACATCCGGAT
LOC_Os02g42450
OsAffx.26230.2.S1_x_at--1--4771Chr02:25533977..25534001 (25 bp)
GCTGCAACAAGAACATCCGGATCAA
LOC_Os02g42450
OsAffx.26230.2.S1_x_at--417--5131Chr02:25533980..25534004 (25 bp)
GCAACAAGAACATCCGGATCAACGC
LOC_Os02g42450
OsAffx.26230.2.S1_x_at--1154--3831Chr02:25534051..25534075 (25 bp)
CTGCACGGCTGCGACAAGGAGCACG
LOC_Os02g42450
Target Sequence 
AGCAGGAGCCACTCGTGCCAGGACTGCTGCAAGGCCGGCCGGTCCTACCCGACGTACGCTTGCTCCCCGGCGACCACCGG
GAGCACCAAGGCGGTGATGACGCTGAACGACTTCGAAGCCGGCGGCGACGGCGGCGACCCGTCGGAGTGCGACGGCAAGT
TCCACAAGAACACGGAGCGCGTGGTGGCGCTGTCCACGGGGTGGTACGCCAACGGCAGGCGCTGCAACAAGAACATCCGG
ATCAACGCCAACGGCAGGTCCGTGCTCGCCAAGGTCGTCGACGAGTGCGACTCCCTGCACGGCTGCGACAAGGAGCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26230.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis