Browse Element(s) Details


OsAffx.26244.1.S1_at

Description tigr:9632.m02842
TID=OsAffx.26244.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3000010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29970OsAffx.26243.1.S1_at11/114+17694340..17695192hypothetical protein
LOC_Os04g29980NANA4+17697317..17698645transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g29990OsAffx.3947.1.S1_at11/114+17700755..17704183Calcium binding EGF domain containing protein
LOC_Os04g30000OsAffx.26244.1.S1_at10/114+17716533..17717106hypothetical protein
LOC_Os04g30010Os.19575.1.A1_at11/114+17718708..17722411Calcium binding EGF domain containing protein, expressed
LOC_Os04g30010Os.19575.2.S1_at10/114+17718708..17722411Calcium binding EGF domain containing protein, expressed
LOC_Os04g30020OsAffx.14038.1.S1_at11/114+17725145..17725522hypothetical protein
LOC_Os04g30030Os.50127.1.S1_at4/114+17726046..17729387Protein kinase domain containing protein
LOC_Os04g30040OsAffx.14039.1.S1_s_at11/114+17742051..17753089Jacalin-like lectin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26244.1.S1_at--722--711Chr04:17716570..17716594 (25 bp)
ATGATGACGACACCAGCGTTCCAGC
LOC_Os04g30000
OsAffx.26244.1.S1_at--1129--1631Chr04:17716584..17716608 (25 bp)
AGCGTTCCAGCGAACTCCGGCGGAG
LOC_Os04g30000
OsAffx.26244.1.S1_at--1109--10811Chr04:17716639..17716663 (25 bp)
TTGTGATGCCAAAGGACGAGACGAC
LOC_Os04g30000
OsAffx.26244.1.S1_at--480--1851Chr04:17716375..17716723 (25 bp)
ACGACAAGATCGAAACACGGCGGCG
NONE
OsAffx.26244.1.S1_at--799--2152Chr06:11634586..11634608 (23 bp)
ACACGGCGGCGACCCACTGGTTCAT
NONE
OsAffx.26244.1.S1_at--922--4171Chr04:17716725..17716749 (25 bp)
CCCACTGGTTCATGGCGACGAAAGC
LOC_Os04g30000
OsAffx.26244.1.S1_at--1107--10592Chr04:17716762..17716786 (25 bp)
TTCGGCGCAAAGGAACCGGCGGCCA
LOC_Os04g30000
OsAffx.26244.1.S1_at--1134--1371Chr04:17716958..17716982 (25 bp)
AGACCTGGGTCATCCTTTATATAGG
LOC_Os04g30000
OsAffx.26244.1.S1_at--677--6391Chr04:17716996..17717020 (25 bp)
GATCGATGCGCATTCGAGAGGAAAC
LOC_Os04g30000
OsAffx.26244.1.S1_at--330--10331Chr04:17717032..17717056 (25 bp)
TTTAGAGTTTATCCCGAGTTCGTCG
LOC_Os04g30000
OsAffx.26244.1.S1_at--320--1072Chr04:17717047..17717071 (25 bp)
GAGTTCGTCGGGATAAGAACCGAGA
LOC_Os04g30000
Target Sequence 
ATGATGACGACACCAGCGTTCCAGCGAACTCCGGCGGAGGAGAAGGGGTGGACGGGCTTCCCGGGGTCCTTGTGATGCCA
AAGGACGAGACGACAAGATCGAAACACGGCGGCGACCCACTGGTTCATGGCGACGAAAGCTTCCGGCGGGGTTTCGGCGC
AAAGGAACCGGCGGCCAGGGTGGAGCTCGGCCTTGCGGAGCCGAGGGAGGCGAAGGCGCAAGCCCGCGTTGACCAGAGGG
GCGGCGCGGCGTGGCTGGAGTTGGCGGCGATGGTGGAGAGAGAGGGCGAGCTGAGGGAGAGGCGACTAGGGCACGGCAGC
ATGGGAAAAGAGGGGAAAAACGAAGAGGAGACCTGGGTCATCCTTTATATAGGCGGAGGAGGAAGAGATCGATGCGCATT
CGAGAGGAAACGGCGGCGGAAATTTAGAGTTTATCCCGAGTTCGTCGGGATAAGAACCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis