Browse Element(s) Details


OsAffx.26251.1.S1_at

Description tigr:9632.m02874
TID=OsAffx.26251.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3023011/11F-box family protein, putative
LOC_Os04g3032011/11F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g30180Os.52155.1.S1_at11/114+17824808..17827711F-box family protein, putative, expressed
LOC_Os04g30190OsAffx.25962.1.S1_at11/114+17829789..17835534transposon protein, putative, Mutator sub-class
LOC_Os04g30200Os.52155.1.S1_at1/114+17837152..17838621F-box domain containing protein, expressed
LOC_Os04g30210Os.18061.1.S1_at11/114+17840338..17843102F-box domain containing protein, expressed
LOC_Os04g30220NANA4+17844686..17845063hypothetical protein
LOC_Os04g30230OsAffx.26251.1.S1_at11/114+17850427..17852199F-box family protein, putative
LOC_Os04g30240Os.15516.1.S1_at11/114+17854777..17862047Protein kinase domain containing protein, expressed
LOC_Os04g30250NANA4+17865754..17870219wall-associated kinase-like 1, putative, expressed
LOC_Os04g30260Os.26888.1.A1_s_at3/114+17874058..17877409Protein kinase domain containing protein
LOC_Os04g30260OsAffx.3949.1.S1_at1/114+17874058..17877409Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26251.1.S1_at--361--3412Chr04:17910202..17910226 (25 bp)
CAGCACTGAGTGGTTGGAGCATCTT
LOC_Os04g30320
OsAffx.26251.1.S1_at--196--3332Chr04:17910205..17910229 (25 bp)
CACTGAGTGGTTGGAGCATCTTGGC
LOC_Os04g30320
OsAffx.26251.1.S1_at--157--72Chr04:17910264..17910288 (25 bp)
ATTGCAAAGGAATAGGGCAGTATCA
LOC_Os04g30320
OsAffx.26251.1.S1_at--771--8952Chr04:17910562..17910586 (25 bp)
TGACATGATTGCACTATCCCAGACC
LOC_Os04g30320
OsAffx.26251.1.S1_at--531--2112Chr04:17910564..17910588 (25 bp)
ACATGATTGCACTATCCCAGACCTG
LOC_Os04g30320
OsAffx.26251.1.S1_at--143--732Chr04:17910566..17910590 (25 bp)
ATGATTGCACTATCCCAGACCTGCA
LOC_Os04g30320
OsAffx.26251.1.S1_at--147--72Chr04:17910569..17910593 (25 bp)
ATTGCACTATCCCAGACCTGCAAGA
LOC_Os04g30320
OsAffx.26251.1.S1_at--1061--9012Chr04:17910571..17910595 (25 bp)
TGCACTATCCCAGACCTGCAAGAAT
LOC_Os04g30320
OsAffx.26251.1.S1_at--888--2032Chr04:17910574..17910598 (25 bp)
ACTATCCCAGACCTGCAAGAATCTT
LOC_Os04g30320
OsAffx.26251.1.S1_at--1139--4192Chr04:17910623..17910647 (25 bp)
CCCGAACACTACAATGTTGGTGATG
LOC_Os04g30320
OsAffx.26251.1.S1_at--24--5512Chr04:17910626..17910650 (25 bp)
GAACACTACAATGTTGGTGATGATA
LOC_Os04g30320
Target Sequence 
CAGCACTGAGTGGTTGGAGCATCTTGGCNCTAACGGATCATTGGAAGAACTNGNAGTGAAGAATTGCAAAGGAATAGGGC
AGTATCANTTTTTAANGTTNGGCNCAGGATGGATGAAGCTTCNGAAATTTGAGTTTGAAAACGANCAANGNTTTTGGAGT
NTTTTCNNNNGAGATNGNGANCCATCATACAAGGCTNANACTTATAGNTATGATCTNTTGTGCGAGNGTTTGAAGGANTT
GAGGTTGGNGCATNTTGTAACAGAGCCNNAAGGCCCAGAAATNGGACTTCGTTTTCTGTTGGGNAAGTGCANGNCGTTAG
AGANGCTNNGCCTNGAGTATGTNAGTGGTCTTATTGACANTGACATGATTGCACTATCCCAGACCTGCAAGAATCTTAAA
AGCATCTCACTTTGGCTGAANCCCGAACACTACAATGTTGGTGATGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis