Browse Element(s) Details


OsAffx.26393.1.S1_at

Description tigr:9632.m03773
TID=OsAffx.26393.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3977011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39720Os.28943.1.S1_x_at4/114+23451612..23454727retrotransposon protein, putative, unclassified
LOC_Os04g39730NANA4+23455586..23461574retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g39740NANA4+23463705..23469031retrotransposon protein, putative, unclassified
LOC_Os04g39750NANA4+23470442..23472169transposon protein, putative, unclassified
LOC_Os04g39760NANA4+23472816..23475847retrotransposon protein, putative, unclassified
LOC_Os04g39770OsAffx.26393.1.S1_at11/114+23478110..23478796hypothetical protein
LOC_Os04g39780OsAffx.4032.1.S1_x_at11/114+23479565..23488249AMP-binding enzyme family protein, expressed
LOC_Os04g39780OsAffx.4032.1.S1_at11/114+23479565..23488249AMP-binding enzyme family protein, expressed
LOC_Os04g39800NANA4+23491058..23491324hypothetical protein
LOC_Os04g39814Os.10238.1.S1_at11/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814OsAffx.26395.1.S1_x_at10/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814OsAffx.14210.1.S1_at4/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os04g39814OsAffx.18631.1.A1_at1/114+23496347..23502631Cyanogenic beta-glucosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26393.1.S1_at--891--7231Chr04:23478694..23478718 (25 bp)
GTCGCCGTCTTTCTGGCCATGTCGC
LOC_Os04g39770
OsAffx.26393.1.S1_at--879--8351Chr04:23478555..23478579 (25 bp)
GGCGGCATTGCAACGGGCCGAGACG
LOC_Os04g39770
OsAffx.26393.1.S1_at--719--1852Chr08:17719307..17719420 (24 bp)
ACGACGGCGACCATGTACACCGCGA
NONE
OsAffx.26393.1.S1_at--100--5751Chr04:23478531..23478555 (25 bp)
GACGGCGACCATGTACACCGCGAAG
LOC_Os04g39770
OsAffx.26393.1.S1_at--741--1931Chr04:23478530..23478554 (25 bp)
ACGGCGACCATGTACACCGCGAAGG
LOC_Os04g39770
OsAffx.26393.1.S1_at--507--3931Chr04:23478529..23478553 (25 bp)
CGGCGACCATGTACACCGCGAAGGA
LOC_Os04g39770
OsAffx.26393.1.S1_at--1128--4591Chr04:23478527..23478551 (25 bp)
GCGACCATGTACACCGCGAAGGAGT
LOC_Os04g39770
OsAffx.26393.1.S1_at--206--4091Chr04:23478526..23478550 (25 bp)
CGACCATGTACACCGCGAAGGAGTT
LOC_Os04g39770
OsAffx.26393.1.S1_at--209--3511Chr04:23478522..23478546 (25 bp)
CATGTACACCGCGAAGGAGTTGCGG
LOC_Os04g39770
OsAffx.26393.1.S1_at--742--5371Chr04:23478419..23478519 (25 bp)
GAAGCAGGACGTGACCAAGGGTTTC
LOC_Os04g39770
OsAffx.26393.1.S1_at--910--2711Chr04:23478418..23478518 (25 bp)
AAGCAGGACGTGACCAAGGGTTTCT
LOC_Os04g39770
Target Sequence 
GTCGCCGTCTTTCTGGCCATGTCGCCGCCCGCCGCCGCCGCCGCCGCCGCATCGTCGTCACAACCAGCGGCGGCGGCGGC
ATTGCAACGGGCCGAGACGACGGCGACCATGTACACCGCGAAGGAGTTGCGGGAGAAGCAGGACGTGACCAAGGGTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis