Browse Element(s) Details


OsAffx.26403.1.S1_at

Description tigr:9632.m03817
TID=OsAffx.26403.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4020011/11HNH endonuclease domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40150Os.12301.1.S1_at11/114+23673726..23677378glycosyl transferase family 17 protein, putative, expressed
LOC_Os04g40160OsAffx.26402.1.S1_at11/114+23678469..23682309hypothetical protein
LOC_Os04g40170OsAffx.14214.1.S1_at11/114+23692317..23692953hypothetical protein
LOC_Os04g40180Os.50983.1.S1_at11/114+23693789..23696092expressed protein
LOC_Os04g40190Os.11411.2.S1_a_at11/114+23695137..23697917expressed protein
LOC_Os04g40190Os.27023.1.A1_at10/114+23695137..23697917expressed protein
LOC_Os04g40190Os.46604.1.S1_s_at2/114+23695137..23697917expressed protein
LOC_Os04g40200OsAffx.26403.1.S1_at11/114+23699937..23701782HNH endonuclease domain-containing protein, putative
LOC_Os04g40200OsAffx.32172.1.S1_s_at1/114+23699937..23701782HNH endonuclease domain-containing protein, putative
LOC_Os04g40210NANA4+23704411..23705266transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40220Os.27102.1.S1_x_at1/114+23708417..23711214transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40230NANA4+23713603..23714869transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40240NANA4+23715163..23717382transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40250Os.53658.1.S1_at8/114+23720171..23722903hypothetical protein
LOC_Os04g40260Os.54774.1.S1_x_at2/114+23725041..23728661retrotransposon, putative, centromere-specific
LOC_Os04g40260Os.54774.1.S1_at1/114+23725041..23728661retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004519molecular_functionendonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26403.1.S1_at--454--2431Chr04:23701696..23701720 (25 bp)
AAAACCTCGTTCATTCAGCGCAGAT
LOC_Os04g40200
OsAffx.26403.1.S1_at--1009--5391Chr04:23701665..23701689 (25 bp)
GAAGCTTGCTGGAATAATGCTCCCA
LOC_Os04g40200
OsAffx.26403.1.S1_at--855--4691Chr04:23701612..23701636 (25 bp)
GCGGCTGGATGCCAACGGAAATCCT
LOC_Os04g40200
OsAffx.26403.1.S1_at--81--8151Chr04:23701596..23701620 (25 bp)
GGAAATCCTGTCCTGAAGGCGCTAA
LOC_Os04g40200
OsAffx.26403.1.S1_at--581--8011Chr04:23701427..23701451 (25 bp)
GGAGGCCCAAATGATCAGAGTAACT
LOC_Os04g40200
OsAffx.26403.1.S1_at--1147--8131Chr04:23701124..23701348 (25 bp)
GGACAATGAACTGGACTCATCCCCA
LOC_Os04g40200
OsAffx.26403.1.S1_at--725--6491Chr04:23701084..23701108 (25 bp)
GATAGCTGTATACGCCTCAGTGGAG
LOC_Os04g40200
OsAffx.26403.1.S1_at--1005--6131Chr04:23701060..23701084 (25 bp)
GAGGGATGATCTGAGCTGCACTTGC
LOC_Os04g40200
OsAffx.26403.1.S1_at--77--4111Chr04:23701027..23701051 (25 bp)
CGACAACCTGTCTGATGCAAACTTC
LOC_Os04g40200
OsAffx.26403.1.S1_at--796--5471Chr04:23700902..23700926 (25 bp)
GAACTTCCAGAGTTTATGACCGAGG
LOC_Os04g40200
OsAffx.26403.1.S1_at--992--8211Chr04:23700875..23700899 (25 bp)
GGAATTCACTGTCTTCAGGTAGCTG
LOC_Os04g40200
Target Sequence 
AAAACCTCGTTCATTCAGCGCAGATGTAAGAGAAGCTTGCTGGAATAATGCTCCCAAGGTGATTGGACGATCTGGTGATC
GTTGGCGGCTGGATGCCAACGGAAATCCTGTCCTGAAGGCGCTAAATGGCAAACATGGAGGCCCAAATGATCAGAGTAAC
TGTCAAATCATACAGACTGGCGCGAACAGATCAAAATCAAACCGTATTCTTAGGAAAGACCAGATGAAAGGTCTATCCAG
GACAATGAACTGGACTCATCCCCACTTAGACACCATCGAGATAGCTGTATACGCCTCAGTGGAGAGGGATGATCTGAGCT
GCACTTGCCCAACCATCGACAACCTGTCTGATGCAAACTTCAAAAAAAACATATGTGAACTTCCAGAGTTTATGACCGAG
GAAGGAATTCACTGTCTTCAGGTAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis