Browse Element(s) Details


OsAffx.26451.1.S1_at

Description tigr:9632.m04233
TID=OsAffx.26451.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=defensin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4413011/11Gamma-thionins family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44050OsAffx.14262.1.S1_at11/114+25878628..25879919expressed protein
LOC_Os04g44060Os.5916.1.S1_s_at11/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44060OsAffx.24678.1.S1_at11/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44060Os.31191.2.S1_x_at1/114+25880249..25882687Aquaporin PIP2.2, putative, expressed
LOC_Os04g44070Os.53205.1.S1_at11/114+25884676..25886798expressed protein
LOC_Os04g44080NANA4+25887401..25887986hypothetical protein
LOC_Os04g44090Os.54162.1.S1_at11/114+25889081..25892266expressed protein
LOC_Os04g44100Os.53622.1.S1_at11/114+25892608..25894832expressed protein
LOC_Os04g44110Os.16890.1.S1_at11/114+25895663..25899284amidohydrolase family protein, expressed
LOC_Os04g44110Os.16890.1.S2_at11/114+25895663..25899284amidohydrolase family protein, expressed
LOC_Os04g44120NANA4+25899417..25899785expressed protein
LOC_Os04g44130OsAffx.26451.1.S1_at11/114+25901343..25901703Gamma-thionins family protein
LOC_Os04g44140OsAffx.30187.4.S1_at11/114+25903166..25903624hypothetical protein
LOC_Os04g44150Os.54940.1.S1_at11/114+25911629..25915274oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g44160OsAffx.26452.1.S1_at11/114+25919936..25920142hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0030414molecular_functionprotease inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26451.1.S1_at--627--1691Chr04:25901572..25901596 (25 bp)
AGCCACAGGTTCGTGGGCGCGTGCA
LOC_Os04g44130
OsAffx.26451.1.S1_at--308--4151Chr04:25901589..25901613 (25 bp)
CGCGTGCATGAGGAAGAGCAACTGC
LOC_Os04g44130
OsAffx.26451.1.S1_at--192--951Chr04:25901599..25901623 (25 bp)
AGGAAGAGCAACTGCGAGCACGTCT
LOC_Os04g44130
OsAffx.26451.1.S1_at--216--2771Chr04:25901602..25901626 (25 bp)
AAGAGCAACTGCGAGCACGTCTGCA
LOC_Os04g44130
OsAffx.26451.1.S1_at--318--1491Chr04:25901605..25901629 (25 bp)
AGCAACTGCGAGCACGTCTGCATGA
LOC_Os04g44130
OsAffx.26451.1.S1_at--700--2551Chr04:25901608..25901632 (25 bp)
AACTGCGAGCACGTCTGCATGACCG
LOC_Os04g44130
OsAffx.26451.1.S1_at--389--9151Chr04:25901611..25901635 (25 bp)
TGCGAGCACGTCTGCATGACCGAGG
LOC_Os04g44130
OsAffx.26451.1.S1_at--301--1511Chr04:25901615..25901639 (25 bp)
AGCACGTCTGCATGACCGAGGGCTT
LOC_Os04g44130
OsAffx.26451.1.S1_at--398--7171Chr04:25901620..25901644 (25 bp)
GTCTGCATGACCGAGGGCTTCCCGT
LOC_Os04g44130
OsAffx.26451.1.S1_at--321--3851Chr04:25901622..25901646 (25 bp)
CTGCATGACCGAGGGCTTCCCGTGG
LOC_Os04g44130
OsAffx.26451.1.S1_at--544--8031Chr04:25901649..25901673 (25 bp)
GGAGTGCAGGTTCCACGGCATCGAG
LOC_Os04g44130
Target Sequence 
AGCCACAGGTTCGTGGGCGCGTGCATGAGGAAGAGCAACTGCGAGCACGTCTGCATGACCGAGGGCTTCCCGTGGGGGGA
GTGCAGGTTCCACGGCATCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26451.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis