Browse Element(s) Details


OsAffx.26455.1.S1_at

Description tigr:9632.m04244
TID=OsAffx.26455.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4423011/11Cytokinin dehydrogenase 5 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44220Os.49961.1.S1_at11/114+25958167..25960749expressed protein
LOC_Os04g44224OsAffx.9169.1.S1_at1/114+25965896..25967826hypothetical protein
LOC_Os04g44230OsAffx.26455.1.S1_at11/114+25980070..25984574Cytokinin dehydrogenase 5 precursor, putative
LOC_Os04g44240Os.5250.1.S1_at11/114+25986970..25988687Cytokinin-O-glucosyltransferase 3, putative, expressed
LOC_Os04g44250OsAffx.4084.1.S1_at11/114+25994621..25996321UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44260OsAffx.26456.1.S1_at11/114+25999104..25999649Thioredoxin reductase 1, putative
LOC_Os04g44270Os.50619.1.S1_x_at1/114+26004418..26007016retrotransposon protein, putative, unclassified
LOC_Os04g44280Os.54667.1.S1_at9/114+26008134..26009353Two-component response regulator ARR3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046420
GO:0009823biological_processcytokinin catabolism
GO:0005773cellular_componentvacuole
GO:0005788cellular_componentendoplasmic reticulum lumen
GO:0008131molecular_functionamine oxidase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26455.1.S1_at--841--5391Chr04:25981483..25981507 (25 bp)
GAAGCTGAGTTACTTGAGGCCCCAC
LOC_Os04g44230
OsAffx.26455.1.S1_at--111--8871Chr04:25981497..25981521 (25 bp)
TGAGGCCCCACGTGTACAGTGTGGA
LOC_Os04g44230
OsAffx.26455.1.S1_at--77--8031Chr04:25981519..25981543 (25 bp)
GGAGGTGTCCTACTTCGACTTCCTG
LOC_Os04g44230
OsAffx.26455.1.S1_at--163--3711Chr04:25981528..25981552 (25 bp)
CTACTTCGACTTCCTGAACAGGGTT
LOC_Os04g44230
OsAffx.26455.1.S1_at--858--9671Chr04:25981600..25981624 (25 bp)
TCACCCATGGCTCAATGTGTTCGTG
LOC_Os04g44230
OsAffx.26455.1.S1_at--1053--7411Chr04:25981616..25981640 (25 bp)
GTGTTCGTGCCAAAGCACGGCATCA
LOC_Os04g44230
OsAffx.26455.1.S1_at--1105--1911Chr04:25981632..25981656 (25 bp)
ACGGCATCACCCAGTTCAAGGGCTT
LOC_Os04g44230
OsAffx.26455.1.S1_at--57--2891Chr04:25981649..25981673 (25 bp)
AAGGGCTTGCTCATGGACACCGTCT
LOC_Os04g44230
OsAffx.26455.1.S1_at--279--831Chr04:25981661..25981685 (25 bp)
ATGGACACCGTCTCGGCGGACGACT
LOC_Os04g44230
OsAffx.26455.1.S1_at--56--10191Chr04:25981704..25981727 (24 bp)
TATACCCTCTTCTCACTGATAAGTG
LOC_Os04g44230
OsAffx.26455.1.S1_at--987--4091Chr04:25984411..25984435 (25 bp)
CGAAGCAGTACCTGGCGCGGCAGCC
LOC_Os04g44230
Target Sequence 
GAAGCTGAGTTACTTGAGGCCCCACGTGTACAGTGTGGAGGTGTCCTACTTCGACTTCCTGAACAGGGTTAGGATGGAGG
AGGAGAGCCTGAGGAGCCGAGGACTTTGGGACGTGCCTCACCCATGGCTCAATGTGTTCGTGCCAAAGCACGGCATCACC
CAGTTCAAGGGCTTGCTCATGGACACCGTCTCGGCGGACGACTTCGAGGGACCCATCCTCGTATACCCTCTTCTCACTGA
TAAGTGGGACGGGAACACGTCGGCGGTGGTGCCGGCGGCGCCGGACGGGGTGATGTACATCTTCGGCGTGCTCCGGTCGA
CCGACCCAGCGCGGTGCGGCCGCGCGTGCGTGGACTCGATCATGGCGCGGCACCGCCGCGTCGCCGACGAGGCGTGCCGT
GATGGCGGCGGCGGAGGCCGCGGCATCGGCGCGAAGCAGTACCTGGCGCGGCAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26455.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis