Browse Element(s) Details


OsAffx.26470.1.S1_at

Description tigr:9632.m04345
TID=OsAffx.26470.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g452005/11expressed protein
LOC_Os04g451904/11MSP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45140Os.26579.1.S1_at11/114+26470776..26473578expressed protein
LOC_Os04g45160OsAffx.14274.1.A1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.1.S1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.2.S1_x_at9/114+26476543..26481414expressed protein
LOC_Os04g45170OsAffx.26672.1.S1_x_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45170Os.56192.1.S1_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45180Os.52243.1.S1_at11/114+26490184..26493410EF hand family protein, expressed
LOC_Os04g45190Os.11087.1.A1_at11/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_x_at6/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_at4/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190Os.24612.1.A1_at1/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45200Os.54567.1.S1_at11/114+26497361..26500426expressed protein
LOC_Os04g45200Os.54567.1.S1_x_at10/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_at5/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_x_at3/114+26497361..26500426expressed protein
LOC_Os04g45200Os.56488.1.S1_at1/114+26497361..26500426expressed protein
LOC_Os04g45210Os.49185.1.S1_at11/114+26500992..26501945Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os04g45220OsAffx.26471.1.S1_at11/114+26502932..26503540hypothetical protein
LOC_Os04g45230OsAffx.4096.1.S1_at11/114+26506311..26506652hypothetical protein
LOC_Os04g45240Os.23271.2.A1_x_at1/114+26508238..26517894expressed protein
LOC_Os04g45254NANA4+26523040..26523317NA

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Gene Ontology Classification
GO idTypeName
GO:0046907biological_processintracellular transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0009706cellular_componentchloroplast inner membrane
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26470.1.S1_at--388--6851Chr04:26497639..26497663 (25 bp)
GTTTGCTGGACTCAAATTTGCAAGC
LOC_Os04g45200
OsAffx.26470.1.S1_at--278--10711Chr04:26497637..26497661 (25 bp)
TTGCTGGACTCAAATTTGCAAGCAC
LOC_Os04g45200
OsAffx.26470.1.S1_at--294--3911Chr04:26497634..26497658 (25 bp)
CTGGACTCAAATTTGCAAGCACTTC
LOC_Os04g45200
OsAffx.26470.1.S1_at--706--8531Chr04:26497633..26497657 (25 bp)
TGGACTCAAATTTGCAAGCACTTCA
LOC_Os04g45200
OsAffx.26470.1.S1_at--118--3751Chr04:26497631..26497653 (23 bp)
CTCAAATTTGCAAGCACTTCAAGCA
LOC_Os04g45200
OsAffx.26470.1.S1_at--708--2451NONE
AACAATTATCAGACTTCGAGACGAA
NONE
OsAffx.26470.1.S1_at--542--2231NONE
ACAATTATCAGACTTCGAGACGAAG
NONE
OsAffx.26470.1.S1_at--1078--5291Chr04:26495588..26495612 (25 bp)
GAAGGTTGTCTATGTCCAACCACCA
LOC_Os04g45190
OsAffx.26470.1.S1_at--578--2891Chr04:26495587..26495611 (25 bp)
AAGGTTGTCTATGTCCAACCACCAC
LOC_Os04g45190
OsAffx.26470.1.S1_at--1083--991Chr04:26495586..26495610 (25 bp)
AGGTTGTCTATGTCCAACCACCACG
LOC_Os04g45190
OsAffx.26470.1.S1_at--558--7911Chr04:26495585..26495609 (25 bp)
GGTTGTCTATGTCCAACCACCACGA
LOC_Os04g45190
Target Sequence 
GTTTGCTGGACTCAAATTTGCAAGCACTTCAAGCACGAAATGCTATTCTGATGCTACTCCTGGCACCGTCTGGGGTTGCT
CACAGGTGCCTTCTTCATCAACTAGTTCAGTAGATCGTATAGACGAACAATTATCAGACTTCGAGACGAAGAAGCAGATC
TCATGCTCCATGCAGCTGACGAACAGAACAGATGACTACATCGCCTTTAAGTTTAACAAAGGATCAGGTAATGTGGTGGA
TGAGAGGAAGTTGAAGGTTGTCTATGTCCAACCACCACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis