Browse Element(s) Details


OsAffx.2649.1.S1_at

Description tigr:9630.m01605
TID=OsAffx.2649.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1717011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17140OsAffx.32056.1.S1_x_at7/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17140OsAffx.10637.1.S1_s_at5/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17140OsAffx.32056.1.S1_at3/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17140OsAffx.10637.3.S1_s_at2/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17140OsAffx.10637.4.S1_s_at2/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17140OsAffx.10637.2.S1_at1/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17150OsAffx.24287.1.S1_at11/112+9826265..9829110Subtilase family protein, expressed
LOC_Os02g17160Os.47463.1.S1_x_at6/112+9831579..9833015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17160Os.14491.2.S1_x_at4/112+9831579..9833015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17170OsAffx.2649.1.S1_at11/112+9836945..9838024hypothetical protein
LOC_Os02g17180OsAffx.24288.1.S1_at11/112+9838335..9839477F-box domain containing protein
LOC_Os02g17190Os.48621.1.S1_at11/112+9848226..9852381Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g17200OsAffx.12082.1.S1_at11/112+9853307..9854419hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2649.1.S1_at--1075--2691Chr02:9837542..9837566 (25 bp)
AAGCTCTTCGCGGACCTGGAGTGGT
LOC_Os02g17170
OsAffx.2649.1.S1_at--974--7491Chr02:9837655..9837679 (25 bp)
GTGGTGCAACCACTGGAACAGCTCG
LOC_Os02g17170
OsAffx.2649.1.S1_at--36--8391Chr02:9837695..9837719 (25 bp)
GGCGAGCTGTTCGTCGTGCACTTCA
LOC_Os02g17170
OsAffx.2649.1.S1_at--221--7351Chr02:9837710..9837734 (25 bp)
GTGCACTTCAGGAACTCGCTGCTGT
LOC_Os02g17170
OsAffx.2649.1.S1_at--826--8311Chr02:9837807..9837831 (25 bp)
GGCTCGGCAGCAACAGGGTGTTCCT
LOC_Os02g17170
OsAffx.2649.1.S1_at--658--2111Chr02:9837819..9837843 (25 bp)
ACAGGGTGTTCCTGGTTACGAGCCA
LOC_Os02g17170
OsAffx.2649.1.S1_at--55--10471Chr02:9837834..9837858 (25 bp)
TTACGAGCCAGTTTGGCGTGTCCAT
LOC_Os02g17170
OsAffx.2649.1.S1_at--541--3891Chr02:9837873..9837897 (25 bp)
CTGGGTTGGAGGAGAACTGCATCTA
LOC_Os02g17170
OsAffx.2649.1.S1_at--135--9071Chr02:9837890..9837914 (25 bp)
TGCATCTACTTCACCAAATCGGATG
LOC_Os02g17170
OsAffx.2649.1.S1_at--41--3271Chr02:9837951..9837975 (25 bp)
CAACTGCTTTGTATGATCCTGGAGA
LOC_Os02g17170
OsAffx.2649.1.S1_at--559--8551Chr02:9837970..9837994 (25 bp)
TGGAGAGGACATTCCTGATTCCATG
LOC_Os02g17170
Target Sequence 
AAGCTCTTCGCGGACCTGGAGTGGTCCGGCAAGATGGCGACGCTGGAGTTCTCGCCGTCGCCGGCGACGCCGACGCTGGC
GAGCGCTCCCCTCGCCATGGTGCCGTGCCCGGCGTGGTGCAACCACTGGAACAGCTCGCTGGTGGACTCCCGCGGCGAGC
TGTTCGTCGTGCACTTCAGGAACTCGCTGCTGTGCCAGCGCACGGTCCTGCTCGTGCAGGTGCACCTGCTGGACTCGACG
CGGCGCGCGTGGGTGAAGGCGGACGGGCTCGGCAGCAACAGGGTGTTCCTGGTTACGAGCCAGTTTGGCGTGTCCATGGC
GGCGGATGAGGCTGGGTTGGAGGAGAACTGCATCTACTTCACCAAATCGGATGACAAGGGGTTGTATGTGTATGATGTGG
GACAGGGAACAACTGCTTTGTATGATCCTGGAGAGGACATTCCTGATTCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis