Browse Element(s) Details


OsAffx.26505.1.S1_at

Description tigr:9632.m04601
TID=OsAffx.26505.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4763011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47600OsAffx.19542.3.S1_x_at3/114+28025944..28030166retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g47610OsAffx.4116.1.S1_x_at11/114+28041996..28042370hypothetical protein
LOC_Os04g47610OsAffx.4116.1.S1_at11/114+28041996..28042370hypothetical protein
LOC_Os04g47620OsAffx.29815.1.S1_x_at11/114+28043844..28046652Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os04g47630OsAffx.26505.1.S1_at11/114+28048432..28048922hypothetical protein
LOC_Os04g47640OsAffx.26506.1.S1_at11/114+28054429..28056732RWP-RK domain containing protein, expressed
LOC_Os04g47640Os.28979.1.S1_at1/114+28054429..28056732RWP-RK domain containing protein, expressed
LOC_Os04g47650OsAffx.26507.1.S1_x_at11/114+28059403..28059826expressed protein
LOC_Os04g47650OsAffx.11111.1.S1_x_at2/114+28059403..28059826expressed protein
LOC_Os04g47660NANA4+28061744..28063868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47670Os.28549.1.S1_at11/114+28064986..28066112expressed protein
LOC_Os04g47680OsAffx.14317.1.S1_at11/114+28068989..28072842Ser/Thr-rich protein T10 in DGCR region, putative, expressed
LOC_Os04g47680Os.51609.1.S1_at1/114+28068989..28072842Ser/Thr-rich protein T10 in DGCR region, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26505.1.S1_at--670--871Chr04:28048469..28048493 (25 bp)
ATGGCGAATCCGGAGTCGACAATGT
LOC_Os04g47630
OsAffx.26505.1.S1_at--155--4591Chr04:28048472..28048496 (25 bp)
GCGAATCCGGAGTCGACAATGTCAG
LOC_Os04g47630
OsAffx.26505.1.S1_at--674--551Chr04:28048476..28048500 (25 bp)
ATCCGGAGTCGACAATGTCAGTGAT
LOC_Os04g47630
OsAffx.26505.1.S1_at--747--8031Chr04:28048480..28048504 (25 bp)
GGAGTCGACAATGTCAGTGATGCTA
LOC_Os04g47630
OsAffx.26505.1.S1_at--14--7231Chr04:28048483..28048507 (25 bp)
GTCGACAATGTCAGTGATGCTAGAG
LOC_Os04g47630
OsAffx.26505.1.S1_at--988--3191Chr04:28048488..28048512 (25 bp)
CAATGTCAGTGATGCTAGAGTCGGC
LOC_Os04g47630
OsAffx.26505.1.S1_at--591--9631Chr04:28048493..28048517 (25 bp)
TCAGTGATGCTAGAGTCGGCGACAT
LOC_Os04g47630
OsAffx.26505.1.S1_at--130--3471Chr04:28048494..28048518 (25 bp)
CAGTGATGCTAGAGTCGGCGACATG
LOC_Os04g47630
OsAffx.26505.1.S1_at--166--9451Chr04:28048508..28048532 (25 bp)
TCGGCGACATGGAGATTGGAACTGT
LOC_Os04g47630
OsAffx.26505.1.S1_at--994--2111Chr04:28048514..28048538 (25 bp)
ACATGGAGATTGGAACTGTGGTTCT
LOC_Os04g47630
OsAffx.26505.1.S1_at--469--6611Chr04:28048521..28048545 (25 bp)
GATTGGAACTGTGGTTCTGATGTCG
LOC_Os04g47630
Target Sequence 
ATGGCGAATCCGGAGTCGACAATGTCAGTGATGCTAGAGTCGGCGACATGGAGATTGGAACTGTGGTTCTGATGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26505.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis