Browse Element(s) Details


OsAffx.26563.1.S1_at

Description tigr:9632.m04993
TID=OsAffx.26563.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5164011/11hypothetical protein
LOC_Os03g488901/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51610Os.28422.1.S1_at11/114+30353060..30365210Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os04g51620NANA4+30375103..30376055hypothetical protein
LOC_Os04g51630Os.9363.2.S1_x_at10/114+30380850..3038326060S ribosomal protein L7-1, putative, expressed
LOC_Os04g51630Os.9363.1.S1_at10/114+30380850..3038326060S ribosomal protein L7-1, putative, expressed
LOC_Os04g51640OsAffx.26563.1.S1_at11/114+30386746..30387750hypothetical protein
LOC_Os04g51650OsAffx.14369.1.S1_at11/114+30388565..30388873hypothetical protein
LOC_Os04g51660Os.53597.1.S1_at11/114+30389791..30391315Transferase family protein, expressed
LOC_Os04g51680NANA4+30396879..30397094hypothetical protein
LOC_Os04g51690Os.11439.1.S1_at11/114+30402082..30409268Glycosyl hydrolase family 47 protein, expressed
LOC_Os04g51700OsAffx.4148.1.S1_at11/114+30410572..30419719DNA ligase I, ATP-dependent family protein, expressed
LOC_Os04g51700Os.5598.1.S1_at11/114+30410572..30419719DNA ligase I, ATP-dependent family protein, expressed
LOC_Os04g51700Os.5598.1.S1_s_at11/114+30410572..30419719DNA ligase I, ATP-dependent family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0007165biological_processsignal transduction
GO:0005576cellular_componentextracellular region
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26563.1.S1_at--736--891Chr04:30387266..30387290 (25 bp)
AGGCGCCGATCAATTACTCCAGGTG
LOC_Os04g51640
OsAffx.26563.1.S1_at--922--9911Chr04:30387252..30387276 (25 bp)
TACTCCAGGTGGATCACGGCACACG
LOC_Os04g51640
OsAffx.26563.1.S1_at--60--5131Chr04:30387234..30387258 (25 bp)
GCACACGGCTCCAAGATCTTCATGA
LOC_Os04g51640
OsAffx.26563.1.S1_at--578--1271Chr04:30387221..30387245 (25 bp)
AGATCTTCATGATGTCGCCGGTGTC
LOC_Os04g51640
OsAffx.26563.1.S1_at--386--6251Chr04:30387145..30387169 (25 bp)
GATGGTCTGCCCGTTGCCCAAGAAT
LOC_Os04g51640
OsAffx.26563.1.S1_at--484--8171Chr04:30387115..30387139 (25 bp)
GGAACAGCTTCAGCCCTTTTGCGTG
LOC_Os04g51640
OsAffx.26563.1.S1_at--60--4611Chr04:30387083..30387107 (25 bp)
GCGACAGGCTCGTCAGGCTGTGCAA
LOC_Os04g51640
OsAffx.26563.1.S1_at--563--1091Chr04:30387018..30387042 (25 bp)
AGTGGCCATGGCTACGTAGACGTTC
LOC_Os04g51640
OsAffx.26563.1.S1_at--656--5792Chr04:30386970..30386994 (25 bp)
GACGACAACGCGTTTTCGATGCCTC
LOC_Os04g51640
OsAffx.26563.1.S1_at--260--5431Chr04:30386894..30386918 (25 bp)
GAACCATCTGGGTGTCCGTCAGGAA
LOC_Os04g51640
OsAffx.26563.1.S1_at--376--1511Chr04:30386801..30386825 (25 bp)
AGCACCTCGAGTGGACGCACGTCGG
LOC_Os04g51640
Target Sequence 
AGGCGCCGATCAATTACTCCAGGTGGATCACGGCACACGGCTCCAAGATCTTCATGATGTCGCCGGTGTCCGCCGAAGTG
ATCCCCGGCATCCCGGTGTTCGACACGGTGACCAGGGCGATGATGGTCTGCCCGTTGCCCAAGAATCTCGGGGAACAGCT
TCAGCCCTTTTGCGTGTCCGTCGGCGACAGGCTCGTCAGGCTGTGCAACCCTGGCTTCCAAGTCCTCGGCGCCCAGCCGC
CGCCTCGCAGTGGCCATGGCTACGTAGACGTTCCGTGGGCCTGGGAGGAAATCTCCGACGACAACGCGTTTTCGATGCCT
CCCTTCACCTCCGACAGGGTGAGCGCCTACGCGGTGCACCCTGACGGGCGGCGAACCATCTGGGTGTCCGTCAGGAAGCC
GGTCGTCGACGGCAGGGGCGGCGGCAGCTACGGCGACCGGAACAACACCTTCTCCTTCGACACGGAGCACCTCGAGTGGA
CGCACGTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis