Browse Element(s) Details


OsAffx.26568.1.S1_at

Description tigr:9632.m05033
TID=OsAffx.26568.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Z26221 come from this gene.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5203011/11zinc finger domain, LSD1 subclass family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52020Os.14486.1.S1_at11/114+30669078..30684842DNA-binding protein, putative, expressed
LOC_Os04g52020Os.50538.1.S1_at2/114+30669078..30684842DNA-binding protein, putative, expressed
LOC_Os04g52030OsAffx.26568.1.S1_at11/114+30685461..30688586zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040OsAffx.14372.1.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040OsAffx.14372.2.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040Os.18049.2.S1_s_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52040Os.18049.1.S1_at11/114+30689432..30694576zinc finger domain, LSD1 subclass family protein, expressed
LOC_Os04g52050Os.27082.1.S1_at11/114+30695142..30700241expressed protein
LOC_Os04g52060OsAffx.26569.1.S1_x_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52060Os.20706.1.S1_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52060OsAffx.26569.1.S1_at11/114+30701490..30706497Transposable element protein, putative, Transposase_24, expressed
LOC_Os04g52074Os.23898.1.S1_at11/114+30708554..30715020expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26568.1.S1_at--1001--2371Chr04:30687127..30687275 (25 bp)
AAACGTTCACTGACTATAGGCCTCC
LOC_Os04g52030
OsAffx.26568.1.S1_at--521--9191Chr04:30687085..30687109 (25 bp)
TGCCTCATCCAGATCCAATAGTAGA
LOC_Os04g52030
OsAffx.26568.1.S1_at--361--10571Chr04:30687057..30687081 (25 bp)
TTCTTCTTTGTCAGCTGTACAGCCT
LOC_Os04g52030
OsAffx.26568.1.S1_at--238--3851Chr04:30687031..30687055 (25 bp)
CTGAGCCAACTTACAGCTTGAACAT
LOC_Os04g52030
OsAffx.26568.1.S1_at--490--1211Chr04:30686875..30686976 (25 bp)
AGTTTATGCTTGTCAGCGGGACCTT
LOC_Os04g52030
OsAffx.26568.1.S1_at--535--831Chr04:30686789..30686813 (25 bp)
AGGGCCGGACAATTGCTGGATTAAT
LOC_Os04g52030
OsAffx.26568.1.S1_at--524--8271Chr04:30686616..30686758 (25 bp)
GGCAGTGTGGGTATCTATTGGCTCT
LOC_Os04g52030
OsAffx.26568.1.S1_at--871--2291Chr04:30686446..30686570 (25 bp)
AAATGTGTACAGGTGCACCCTTTAA
LOC_Os04g52030
OsAffx.26568.1.S1_at--43--4871Chr04:30686402..30686426 (25 bp)
GCTAGACTCAAAGGCCATTGGGATC
LOC_Os04g52030
OsAffx.26568.1.S1_at--870--7271Chr04:30686106..30686130 (25 bp)
GTGCCACAAGGCCAAAAATCTCATT
LOC_Os04g52030
OsAffx.26568.1.S1_at--746--9351Chr04:30686059..30686083 (25 bp)
TCGCACTGGTAAAGCTGTTCTTGAA
LOC_Os04g52030
Target Sequence 
AAACGTTCACTGACTATAGGCCTCCCAAACTCTCTCTTGGTCTGCCTCATCCAGATCCAATAGTAGAAACTTCTTCTTTG
TCAGCTGTACAGCCTCCTGAGCCAACTTACAGCTTGAACATCATGGATGAATTGGATGAGACAAAGGCCTTGTCTTGCTT
GCAAATCGAAACATTAGTTTATGCTTGTCAGCGGGACCTTTATCATCTCCCTACTGGTGATAGAGCAGGTTTTTTCATTG
GTGATGGAGCTGGTGTTGGTAAGGGCCGGACAATTGCTGGATTAATATGGGAAAATTGGCAACAGGGAAAGCATAAGGCA
GTGTGGGTATCTATTGGCTCTGATTTGAAGTATGATGCTCGAAGAGATTTGGATGACGTTGGTGCAAAATGTGTACAGGT
GCACCCTTTAAATAAGCTACCATATTCTAAGCTAGACTCAAAGGCCATTGGGATCAAAAATGGGTGCCACAAGGCCAAAA
ATCTCATTCCTGATGCAGGAGCCAGCCCACTCGCACTGGTAAAGCTGTTCTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis