Browse Element(s) Details


OsAffx.26596.1.S1_at

Description tigr:9632.m05258
TID=OsAffx.26596.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to receptor-like kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5413011/11receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54070OsAffx.14405.1.S1_at11/114+32004052..32007888receptor-like kinase, putative, expressed
LOC_Os04g54070OsAffx.13556.1.S1_x_at1/114+32004052..32007888receptor-like kinase, putative, expressed
LOC_Os04g54080OsAffx.14405.2.S1_at11/114+32010011..32014576D-mannose binding lectin family protein, expressed
LOC_Os04g54080OsAffx.14405.1.S1_at3/114+32010011..32014576D-mannose binding lectin family protein, expressed
LOC_Os04g54090OsAffx.14406.1.S1_at11/114+32015634..32015958Rapid ALkalinization Factor family protein
LOC_Os04g54100OsAffx.26595.1.S1_s_at11/114+32016250..32016636secondary cell wall-related glycosyltransferase family 47, putative
LOC_Os04g54110OsAffx.14407.1.S1_at11/114+32019311..32023465D-mannose binding lectin family protein, expressed
LOC_Os04g54110Os.47968.2.A1_at1/114+32019311..32023465D-mannose binding lectin family protein, expressed
LOC_Os04g54120OsAffx.14408.1.S1_at11/114+32025814..32029115D-mannose binding lectin family protein
LOC_Os04g54130OsAffx.26596.1.S1_at11/114+32029886..32033965receptor-like kinase, putative, expressed
LOC_Os04g54140Os.54694.1.S1_at11/114+32035059..32039199D-mannose binding lectin family protein, expressed
LOC_Os04g54150NANA4+32041021..32044040retrotransposon protein, putative, unclassified
LOC_Os04g54160NANA4+32045225..32048856retrotransposon protein, putative, unclassified
LOC_Os04g54170NANA4+32052191..32052791hypothetical protein
LOC_Os04g54180OsAffx.14409.1.S1_at11/114+32054294..32057778D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26596.1.S1_at--688--7451Chr04:32030833..32030857 (25 bp)
GTGTCGAGTACCTTCACAACGTGAA
LOC_Os04g54130
OsAffx.26596.1.S1_at--212--8251Chr04:32030735..32030759 (25 bp)
GGCACTGCCAAGCTGTTTATCAACG
LOC_Os04g54130
OsAffx.26596.1.S1_at--2--6371Chr04:32030703..32030726 (24 bp)
GATCCAACATTAGTTCTGTCAGCGG
LOC_Os04g54130
OsAffx.26596.1.S1_at--228--7111Chr04:32030564..32030709 (25 bp)
GTCAGCGGGCTACATAGCTCCAGAA
LOC_Os04g54130
OsAffx.26596.1.S1_at--501--9931Chr04:32030450..32030469 (20 bp)
TACCAACTTTTCTTCGTGAGACCTG
LOC_Os04g54130
OsAffx.26596.1.S1_at--716--951Chr04:32030117..32030141 (25 bp)
AGGACTGATCAAACCTGAGCCTGAT
LOC_Os04g54130
OsAffx.26596.1.S1_at--397--3871Chr04:32030097..32030121 (25 bp)
CTGATCTCCTGCTTGGGCTAGACAG
LOC_Os04g54130
OsAffx.26596.1.S1_at--409--7031Chr04:32030047..32030071 (25 bp)
GTACAGCAATCTCCCGATGACAGGC
LOC_Os04g54130
OsAffx.26596.1.S1_at--989--8951Chr04:32030030..32030054 (25 bp)
TGACAGGCCTACCATGAATCAGGTT
LOC_Os04g54130
OsAffx.26596.1.S1_at--786--3431Chr04:32029943..32029967 (25 bp)
CAGATGCGAGCCTTCAGTTTCACAA
LOC_Os04g54130
OsAffx.26596.1.S1_at--62--6951Chr04:32029918..32029942 (25 bp)
GTAGTATCTGACACAGAGCCGGCCT
LOC_Os04g54130
Target Sequence 
GTGTCGAGTACCTTCACAACGTGAAAGTTATTCACAGGGATCTGAAACCATCCAACATACTCCTAGATGACAATCGGAGA
CCTAAGGTAGCAGACTTTGGCACTGCCAAGCTGTTTATCAACGACCAGACTGATCCAACATTAGTTCTGTCAGCGGGCTA
CATAGCTCCAGAATATGCAGCTCAAGGAAATCTGACGCTCAAGTGCGATGTGTATAGCTTTGGAGTTGTGTTGCTAGAGA
TAATCAGTGGTAAAAGGAACAGGACATTACCAACTTTTCTTCGTGAGACCTGGGAGTCTTGGAAACAGCATGAGATCGAG
GACATTCTTGATTTAGGACTGATCAAACCTGAGCCTGATCTCCTGCTTGGGCTAGACAGGTGCATCCAAATTGGGCTTCT
CTGCGTACAGCAATCTCCCGATGACAGGCCTACCATGAATCAGGTTGTCTCAATGCTAACCAAATACAGTTCACAGATAG
CCATGCCCAAGAATCCCATGATCAACAGCAGATGCGAGCCTTCAGTTTCACAAGTAGTATCTGACACAGAGCCGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis