Browse Element(s) Details


OsAffx.26674.1.S1_at

Description tigr:9633.m00003
TID=OsAffx.26674.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=P-type transporting ATPase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0103011/11Phospholipid-transporting ATPase 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01010OsAffx.26673.1.S1_at11/115+12587..14164hypothetical protein
LOC_Os05g01020Os.47430.1.S1_x_at11/115+16675..25049Paired amphipathic helix repeat family protein, expressed
LOC_Os05g01020Os.16909.1.S1_s_at11/115+16675..25049Paired amphipathic helix repeat family protein, expressed
LOC_Os05g01030OsAffx.26674.1.S1_at11/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01030Os.52001.1.S1_x_at11/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01030Os.52001.1.S2_at4/115+38144..43031Phospholipid-transporting ATPase 10, putative, expressed
LOC_Os05g01040Os.28975.1.S1_at11/115+43240..47780transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g01040Os.51196.1.S1_x_at10/115+43240..47780transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g01050Os.2473.1.S1_at11/115+48925..51138DNA-binding protein, putative, expressed
LOC_Os05g01060OsAffx.4218.1.S1_at10/115+53319..61323expressed protein
LOC_Os05g01070OsAffx.14486.1.S1_at10/115+63585..63862hypothetical protein
LOC_Os05g01080OsAffx.14487.1.S1_at11/115+65473..65973hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26674.1.S1_at--878--8451Chr05:42366..42390 (25 bp)
TGGCCAGCGGCGTGATCATCTTCTT
LOC_Os05g01030
OsAffx.26674.1.S1_at--567--431Chr05:42383..42407 (25 bp)
ATCTTCTTCCTGACGTCGGCGGCGC
LOC_Os05g01030
OsAffx.26674.1.S1_at--162--7531Chr05:42443..42467 (25 bp)
GTGGACCTGGCCATCCTGAGCGGCA
LOC_Os05g01030
OsAffx.26674.1.S1_at--36--8251Chr05:42464..42488 (25 bp)
GGCACCGCCTACACGTGCGTGGTGT
LOC_Os05g01030
OsAffx.26674.1.S1_at--691--5751Chr05:42508..42532 (25 bp)
GACGGTGACGGCCAACTACTTCACC
LOC_Os05g01030
OsAffx.26674.1.S1_at--805--2531Chr05:42521..42545 (25 bp)
AACTACTTCACCCTGGTGCAGCACG
LOC_Os05g01030
OsAffx.26674.1.S1_at--727--4271Chr05:42532..42556 (25 bp)
CCTGGTGCAGCACGCCTGCATCTGG
LOC_Os05g01030
OsAffx.26674.1.S1_at--280--7551Chr05:42563..42587 (25 bp)
GTGGCGCTGTGGTACGTGTTCCTCC
LOC_Os05g01030
OsAffx.26674.1.S1_at--586--9911Chr05:42668..42692 (25 bp)
TACTGGGTGGTCACCCTGCTCGTCC
LOC_Os05g01030
OsAffx.26674.1.S1_at--724--2451Chr05:42761..42785 (25 bp)
AACAAGATCCAGTGGCTGCAGCACC
LOC_Os05g01030
OsAffx.26674.1.S1_at--569--1291Chr05:42765..42789 (25 bp)
AGATCCAGTGGCTGCAGCACCGTGG
LOC_Os05g01030
Target Sequence 
TGGCCAGCGGCGTGATCATCTTCTTCCTGACGTCGGCGGCGCTGCAGCACCAGGCGTTCCGGCGGGGCGGCGAGGTGGTG
GACCTGGCCATCCTGAGCGGCACCGCCTACACGTGCGTGGTGTGGGCGGTGAACGCGCAGATGACGGTGACGGCCAACTA
CTTCACCCTGGTGCAGCACGCCTGCATCTGGGGCAGCGTGGCGCTGTGGTACGTGTTCCTCCTCGCCTACGGCGCCATCA
CCCCGGCCTTCTCCACCAACTACTTCATGCTCTTCACCGACGGCCTGGCCGCCGCGCCCTCCTACTGGGTGGTCACCCTG
CTCGTCCCCGCCGCCGCGCTCCTCCCTTACTTCACCTACTCCGCCGCCAAGACGCGCTTCTTCCCCGACTACCACAACAA
GATCCAGTGGCTGCAGCACCGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis