Browse Element(s) Details


OsAffx.26687.1.S1_at

Description tigr:9633.m00121
TID=OsAffx.26687.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY088670 mitochondrial import inner membrane translocase subunit Tim9
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0205011/11Mitochondrial import inner membrane translocase subunit Tim9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02010Os.11999.1.S1_at11/115+552864..554918expressed protein
LOC_Os05g02020Os.12684.1.S1_at11/115+555189..558490Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os05g02030OsAffx.14496.1.S1_at11/115+568308..569829OB-fold nucleic acid binding domain containing protein
LOC_Os05g02040Os.53618.1.S1_at11/115+571398..575870replication factor-a protein 1 containing protein, expressed
LOC_Os05g02050OsAffx.26687.1.S1_at11/115+577402..577786Mitochondrial import inner membrane translocase subunit Tim9, putative, expressed
LOC_Os05g02060Os.10155.1.S1_at11/115+578361..581363amino acid selective channel protein, putative, expressed
LOC_Os05g02070Os.12791.4.S1_x_at11/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.2.S1_a_at11/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.14153.3.S1_x_at9/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.1.S1_a_at8/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02070Os.12791.2.S1_x_at5/115+583909..584822Metallothionein family protein, expressed
LOC_Os05g02080OsAffx.31479.5.S1_x_at11/115+591006..597274hypothetical protein
LOC_Os05g02080OsAffx.9194.2.S1_at3/115+591006..597274hypothetical protein
LOC_Os05g02090OsAffx.31479.1.S1_x_at11/115+598844..604260AT hook motif-containing protein, putative
LOC_Os05g02090OsAffx.31479.4.S1_x_at9/115+598844..604260AT hook motif-containing protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006626biological_processprotein targeting to mitochondrion
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005758cellular_componentmitochondrial intermembrane space
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26687.1.S1_at--864--5611Chr05:577672..577695 (24 bp)
GACAAGCTCCAGACCCGAGACGCGA
LOC_Os05g02050
OsAffx.26687.1.S1_at--951--4071Chr05:577575..577680 (25 bp)
CGAGACGCGATACGGCTGTACAACT
LOC_Os05g02050
OsAffx.26687.1.S1_at--769--1811Chr05:577571..577591 (21 bp)
ACGCGATACGGCTGTACAACTGGGT
LOC_Os05g02050
OsAffx.26687.1.S1_at--896--311Chr05:577566..577590 (25 bp)
ATACGGCTGTACAACTGGGTGTCGC
LOC_Os05g02050
OsAffx.26687.1.S1_at--1125--1931Chr05:577564..577588 (25 bp)
ACGGCTGTACAACTGGGTGTCGCAC
LOC_Os05g02050
OsAffx.26687.1.S1_at--173--8351Chr05:577562..577586 (25 bp)
GGCTGTACAACTGGGTGTCGCACCG
LOC_Os05g02050
OsAffx.26687.1.S1_at--705--8711Chr05:577559..577583 (25 bp)
TGTACAACTGGGTGTCGCACCGGTG
LOC_Os05g02050
OsAffx.26687.1.S1_at--981--7451Chr05:577548..577572 (25 bp)
GTGTCGCACCGGTGCTTCTCCGACT
LOC_Os05g02050
OsAffx.26687.1.S1_at--12--9971Chr05:577509..577533 (25 bp)
TACCGGCGAACCCTCGGCAAGAAGG
LOC_Os05g02050
OsAffx.26687.1.S1_at--1017--6171Chr05:577482..577506 (25 bp)
GAGGACTGCGTCAGGTCCTGCGTCC
LOC_Os05g02050
OsAffx.26687.1.S1_at--334--4651Chr05:577475..577499 (25 bp)
GCGTCAGGTCCTGCGTCCGCAAGTT
LOC_Os05g02050
Target Sequence 
GACAAGCTCCAGACCCGAGACGCGATACGGCTGTACAACTGGGTGTCGCACCGGTGCTTCTCCGACTGCGTCACCACCTT
CTACCGGCGAACCCTCGGCAAGAAGGAGGAGGACTGCGTCAGGTCCTGCGTCCGCAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26687.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis