Browse Element(s) Details


OsAffx.26725.1.S1_at

Description tigr:9633.m00344
TID=OsAffx.26725.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to T31J12.4
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0418011/11Agenet domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04150Os.8084.1.S1_x_at11/115+1837693..1841560expressed protein
LOC_Os05g04150Os.37687.1.A1_at11/115+1837693..1841560expressed protein
LOC_Os05g04160OsAffx.14535.1.S1_at11/115+1842606..1844519pentatricopeptide, putative
LOC_Os05g04170Os.5660.1.S1_at11/115+1844908..1851340AMP-binding enzyme family protein, expressed
LOC_Os05g04170Os.22710.2.S1_x_at1/115+1844908..1851340AMP-binding enzyme family protein, expressed
LOC_Os05g04180OsAffx.26725.1.S1_x_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04180Os.16028.1.S1_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04180OsAffx.26725.1.S1_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04190Os.16015.1.S1_a_at11/115+1867875..1873855Auxin-independent growth promoter protein, putative, expressed
LOC_Os05g04200OsAffx.26726.1.S1_at7/115+1877124..1879153hypothetical protein
LOC_Os05g04210OsAffx.14536.1.S1_at11/115+1885939..1887306Cpm7, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26725.1.S1_at--1129--2211Chr05:1865540..1865633 (25 bp)
ACAAGTTACACAGATGATCCCTGGA
LOC_Os05g04180
OsAffx.26725.1.S1_at--973--711Chr05:1865527..1865551 (25 bp)
ATGATCCCTGGATTGTTTTACATGC
LOC_Os05g04180
OsAffx.26725.1.S1_at--1075--6371Chr05:1865525..1865549 (25 bp)
GATCCCTGGATTGTTTTACATGCTA
LOC_Os05g04180
OsAffx.26725.1.S1_at--969--6591Chr05:1865517..1865541 (25 bp)
GATTGTTTTACATGCTACTCCCTAC
LOC_Os05g04180
OsAffx.26725.1.S1_at--88--8791Chr05:1865514..1865538 (25 bp)
TGTTTTACATGCTACTCCCTACATT
LOC_Os05g04180
OsAffx.26725.1.S1_at--311--10331Chr05:1865511..1865535 (25 bp)
TTTACATGCTACTCCCTACATTTCA
LOC_Os05g04180
OsAffx.26725.1.S1_at--561--3531Chr05:1865507..1865531 (25 bp)
CATGCTACTCCCTACATTTCACAAT
LOC_Os05g04180
OsAffx.26725.1.S1_at--759--8691Chr05:1863946..1863970 (25 bp)
TGTCCTCCAGATATCCCTGTAACCA
LOC_Os05g04180
OsAffx.26725.1.S1_at--140--3811Chr05:1863942..1863966 (25 bp)
CTCCAGATATCCCTGTAACCAGTGG
LOC_Os05g04180
OsAffx.26725.1.S1_at--553--6511Chr05:1863937..1863961 (25 bp)
GATATCCCTGTAACCAGTGGATTCA
LOC_Os05g04180
OsAffx.26725.1.S1_at--1042--10131Chr05:1863935..1863959 (25 bp)
TATCCCTGTAACCAGTGGATTCAAT
LOC_Os05g04180
Target Sequence 
ACAAGTTACACAGATGATCCCTGGATTGTTTTACATGCTACTCCCTACATTTCACAATAATGTGACAAAAAAATTTGCCA
AAGGCAGCAAGGTCGAAGTCACCAGTAATGATGATGGTTTTCATGGAGCTTGGTTCCAGGGGACTGCTCTAAAATATGTT
AACAACAAGATTTTAGTGGAATATGACGCATTGAAGGCTGATGATGAAATCACTCCTTTGACAGAAGCCATAGAAGTGCA
GCACGTCAGACCCTGTCCTCCAGATATCCCTGTAACCAGTGGATTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis