Browse Element(s) Details


OsAffx.2674.1.S1_at

Description tigr:9630.m01781
TID=OsAffx.2674.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1879011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18740OsAffx.32001.1.S1_at10/112+10929025..10931388retrotransposon protein, putative, unclassified
LOC_Os02g18740OsAffx.20687.1.S1_at6/112+10929025..10931388retrotransposon protein, putative, unclassified
LOC_Os02g18750OsAffx.2671.1.S1_x_at8/112+10931589..10932523expressed protein
LOC_Os02g18750Os.54814.1.S1_at8/112+10931589..10932523expressed protein
LOC_Os02g18760OsAffx.28462.1.S1_at1/112+10934277..10938654retrotransposon protein, putative, unclassified
LOC_Os02g18770OsAffx.12105.1.S1_at11/112+10939563..10941269hypothetical protein
LOC_Os02g18770Os.57362.1.S1_at1/112+10939563..10941269hypothetical protein
LOC_Os02g18780OsAffx.14722.1.S1_x_at7/112+10945254..10947535hypothetical protein
LOC_Os02g18780OsAffx.14722.1.S1_at3/112+10945254..10947535hypothetical protein
LOC_Os02g18790OsAffx.2674.1.S1_at11/112+10955205..10955979hypothetical protein
LOC_Os02g18800OsAffx.29369.1.S1_at11/112+10959461..10960432hypothetical protein
LOC_Os02g18810Os.54169.1.S1_at11/112+10960659..10968044pentatricopeptide, putative, expressed
LOC_Os02g18820Os.16225.1.S1_at11/112+10972767..10983602transducin family protein, putative, expressed
LOC_Os02g18820Os.23650.1.A1_at9/112+10972767..10983602transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2674.1.S1_at--304--931Chr02:10955558..10955582 (25 bp)
AGGAACACCCACGTGAATTTTCACG
LOC_Os02g18790
OsAffx.2674.1.S1_at--135--10472Chr02:10955589..10955613 (25 bp)
TTACCACGTGCTTATGGGCGGTCGA
LOC_Os02g18790
OsAffx.2674.1.S1_at--134--7551Chr02:10955604..10955628 (25 bp)
GGGCGGTCGATGCACCATAAATCTT
LOC_Os02g18790
OsAffx.2674.1.S1_at--280--10731Chr02:10955627..10955651 (25 bp)
TTGCAAAACCAAGCCTGCGAGGAAT
LOC_Os02g18790
OsAffx.2674.1.S1_at--461--6771Chr02:10955680..10955704 (25 bp)
GTTAACACTGTGACCCGCAAGAAGA
LOC_Os02g18790
OsAffx.2674.1.S1_at--774--551Chr02:10955712..10955736 (25 bp)
ATCCGCACCTAGCACGATGGGAAGC
LOC_Os02g18790
OsAffx.2674.1.S1_at--612--1491Chr02:10955734..10955758 (25 bp)
AGCAACGATGGTGATCACTGGCCCT
LOC_Os02g18790
OsAffx.2674.1.S1_at--38--8851Chr02:10955745..10955769 (25 bp)
TGATCACTGGCCCTGCACGGAGACA
LOC_Os02g18790
OsAffx.2674.1.S1_at--943--1931Chr02:10955773..10955797 (25 bp)
ACGGCTGGCCCTGAAAGCCTGAGAA
LOC_Os02g18790
OsAffx.2674.1.S1_at--1125--2731Chr02:10955796..10955820 (25 bp)
AAGAAGGCAGCGACTCCGGATCCAG
LOC_Os02g18790
OsAffx.2674.1.S1_at--796--4632Chr05:13015096..13015115 (20 bp)
GCGTAGAAGAAGCTCACCCGGCCAG
NONE
Target Sequence 
AGGAACACCCACGTGAATTTTCACGTTTTGGTTACCACGTGCTTATGGGCGGTCGATGCACCATAAATCTTGCAAAACCA
AGCCTGCGAGGAATGCAGGGAGGAGATAAAACAACGGCTACAGTTAACACTGTGACCCGCAAGAAGACACCGGCATCCGC
ACCTAGCACGATGGGAAGCAACGATGGTGATCACTGGCCCTGCACGGAGACAGCGACGGCTGGCCCTGAAAGCCTGAGAA
GAAGGCAGCGACTCCGGATCCAGCCCCGCGAGGTCGAGGGGAGTGGAGGTGCTGAAGAGATGCCGGAGGAGCGACGCGAG
ATGGTCACCGGGGGCGTAGAAGAAGCTCACCCGGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis