Browse Element(s) Details


OsAffx.26752.1.A1_at

Description tigr:9633.m00519
TID=OsAffx.26752.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g059801/11DNA directed RNA polymerase, 7 kDa subunit family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05890Os.27691.1.S1_x_at1/115+2936678..2940565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05900Os.27691.2.S1_x_at3/115+2940818..2941777retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05900Os.27691.1.S1_x_at1/115+2940818..2941777retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05910NANA5+2942544..2944705retrotransposon protein, putative, unclassified, expressed
LOC_Os05g05920OsAffx.14560.1.S1_at11/115+2945594..2946690Desiccation-related protein PCC13-62 precursor, putative, expressed
LOC_Os05g05930NANA5+2947630..2948211hypothetical protein
LOC_Os05g05940Os.19814.1.S1_at11/115+2948872..2950773Rubber elongation factor protein containing protein, expressed
LOC_Os05g05950Os.9224.1.S1_at11/115+2951707..2956067chloroplast outer membrane protein, putative, expressed
LOC_Os05g05960OsAffx.10645.1.S1_at2/115+2961018..2961335hypothetical protein
LOC_Os05g05970OsAffx.26751.1.S1_at11/115+2963025..2963408hypothetical protein
LOC_Os05g05980OsAffx.14563.1.S1_at10/115+2965142..2969147DNA directed RNA polymerase, 7 kDa subunit family protein
LOC_Os05g05980OsAffx.26752.1.A1_at1/115+2965142..2969147DNA directed RNA polymerase, 7 kDa subunit family protein
LOC_Os05g05990OsAffx.25962.1.S1_at11/115+2976416..2981049transposon protein, putative, Mutator sub-class
LOC_Os05g05990OsAffx.14185.1.S1_x_at1/115+2976416..2981049transposon protein, putative, Mutator sub-class
LOC_Os05g06000OsAffx.26752.1.S1_at11/115+2981442..2981852hypothetical protein
LOC_Os05g06010OsAffx.4258.1.S1_at11/115+2985922..2986363hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26752.1.A1_at--265--8931Chr05:2981776..2981800 (25 bp)
TGAGCCACGACCTTTTCCGTCTCGG
NONE
OsAffx.26752.1.A1_at--837--8011Chr05:2981694..2981718 (25 bp)
GGACCTCGTCCTGGAACTCGTCGAA
NONE
OsAffx.26752.1.A1_at--375--7251Chr05:2981687..2981711 (25 bp)
GTCCTGGAACTCGTCGAACTCGAGA
NONE
OsAffx.26752.1.A1_at--1101--7211Chr05:2981675..2981699 (25 bp)
GTCGAACTCGAGATCCAGCTTGTCG
NONE
OsAffx.26752.1.A1_at--758--3911Chr05:2981612..2981636 (25 bp)
CGGCGACAGGAACTCCGAGTCGTCC
NONE
OsAffx.26752.1.A1_at--356--1131Chr05:2981595..2981619 (25 bp)
AGTCGTCCATCTCCTCCAGGTTCGG
NONE
OsAffx.26752.1.A1_at--1039--10631Chr05:2981560..2981584 (25 bp)
TTCCTCCACGCCAGGATGAAACCGA
NONE
OsAffx.26752.1.A1_at--25--671Chr05:2981545..2981569 (25 bp)
ATGAAACCGATAGTCGCCTGCGGCA
NONE
OsAffx.26752.1.A1_at--382--4051Chr05:2981538..2981562 (25 bp)
CGATAGTCGCCTGCGGCATCGGCAG
NONE
OsAffx.26752.1.A1_at--817--8272Chr05:2965196..2965215 (20 bp)
GGCATCGGCAGCTTCACGCGACGAG
LOC_Os05g05980
OsAffx.26752.1.A1_at--1049--1531Chr05:2981515..2981539 (25 bp)
AGCTTCACGCGACGAGGCCCGGCTA
NONE
Target Sequence 
TGAGCCACGACCTTTTCCGTCTCGGCGTGGGCGGCCTCGTCGAACGTCTGCAGGTAGCCGCCGGTCTCCTGGACCTCGCG
GCGGACCTCGTCCTGGAACTCGTCGAACTCGAGATCCAGCTTGTCGAGGTAGGCGTGCAGCTCCTCACGCTGCCTGCGAT
GCTCCGGCGACAGGAACTCCGAGTCGTCCATCTCCTCCAGGTTCGGCGATGGCCCCTTCCTCCACGCCAGGATGAAACCG
ATAGTCGCCTGCGGCATCGGCAGCTTCACGCGACGAGGCCCGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26752.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis